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Highly Divergent Genetic Variants of Soricid-Borne Altai Virus (Hantaviridae) in Eurasia Suggest Ancient Host-Switching Events.

Kang HJ, Gu SH, Yashina LN, Cook JA, Yanagihara R.

Viruses. 2019 Sep 14;11(9). pii: E857. doi: 10.3390/v11090857.


Complex History of Codiversification and Host Switching of a Newfound Soricid-Borne Orthohantavirus in North America.

Liphardt SW, Kang HJ, Dizney LJ, Ruedas LA, Cook JA, Yanagihara R.

Viruses. 2019 Jul 11;11(7). pii: E637. doi: 10.3390/v11070637.


The next chapter of human-plague science.

McLean BS, Cook JA, Durden LA, Hoberg EP, Guralnick RP.

Proc Natl Acad Sci U S A. 2019 Jul 16;116(29):14411-14412. doi: 10.1073/pnas.1908836116. Epub 2019 Jun 28. No abstract available.


Building an integrated infrastructure for exploring biodiversity: field collections and archives of mammals and parasites.

Galbreath KE, Hoberg EP, Cook JA, Armién B, Bell KC, Campbell ML, Dunnum JL, Dursahinhan AT, Eckerlin RP, Gardner SL, Greiman SE, Henttonen H, Jiménez FA, Koehler AVA, Nyamsuren B, Tkach VV, Torres-Pérez F, Tsvetkova A, Hope AG.

J Mammal. 2019 Apr 24;100(2):382-393. doi: 10.1093/jmammal/gyz048. Epub 2019 Apr 10.


Living on the edge: Exploring the role of coastal refugia in the Alexander Archipelago of Alaska.

Sawyer YE, MacDonald SO, Lessa EP, Cook JA.

Ecol Evol. 2019 Feb 1;9(4):1777-1797. doi: 10.1002/ece3.4861. eCollection 2019 Feb.


Museum specimens of terrestrial vertebrates are sensitive indicators of environmental change in the Anthropocene.

Schmitt CJ, Cook JA, Zamudio KR, Edwards SV.

Philos Trans R Soc Lond B Biol Sci. 2018 Nov 19;374(1763). pii: 20170387. doi: 10.1098/rstb.2017.0387. Review.


Museum metabarcoding: A novel method revealing gut helminth communities of small mammals across space and time.

Greiman SE, Cook JA, Tkach VV, Hoberg EP, Menning DM, Hope AG, Sonsthagen SA, Talbot SL.

Int J Parasitol. 2018 Nov;48(13):1061-1070. doi: 10.1016/j.ijpara.2018.08.001. Epub 2018 Oct 11.


Whole-genome analysis of Mustela erminea finds that pulsed hybridization impacts evolution at high latitudes.

Colella JP, Lan T, Schuster SC, Talbot SL, Cook JA, Lindqvist C.

Commun Biol. 2018 May 31;1:51. doi: 10.1038/s42003-018-0058-y. eCollection 2018.


Impacts of Inference Method and Data set Filtering on Phylogenomic Resolution in a Rapid Radiation of Ground Squirrels (Xerinae: Marmotini).

Mclean BS, Bell KC, Allen JM, Helgen KM, Cook JA.

Syst Biol. 2019 Mar 1;68(2):298-316. doi: 10.1093/sysbio/syy064.


Sympatric Parasites Have Similar Host-Associated, but Asynchronous, Patterns of Diversification.

Bell KC, Demboski JR, Cook JA.

Am Nat. 2018 Sep;192(3):E106-E119. doi: 10.1086/698300. Epub 2018 Jul 11.


The next generation of natural history collections.

Schindel DE, Cook JA.

PLoS Biol. 2018 Jul 16;16(7):e2006125. doi: 10.1371/journal.pbio.2006125. eCollection 2018 Jul.


Impacts of late Quaternary environmental change on the long-tailed ground squirrel (Urocitellus undulatus) in Mongolia.

McLean BS, Nyamsuren B, Tchabovsky A, Cook JA.

Zool Res. 2018 Sep 18;39(5):364-372. doi: 10.24272/j.issn.2095-8137.2018.042. Epub 2018 Mar 8.


Historical perspective: Revisiting the St. Lucia Project, a multi-year comparison trial of schistosomiasis control strategies.

Ivy JA, King CH, Cook JA, Colley DG.

PLoS Negl Trop Dis. 2018 Jan 31;12(1):e0006223. doi: 10.1371/journal.pntd.0006223. eCollection 2018 Jan. No abstract available.


Trait-specific processes of convergence and conservatism shape ecomorphological evolution in ground-dwelling squirrels.

McLean BS, Helgen KM, Goodwin HT, Cook JA.

Evolution. 2018 Mar;72(3):473-489. doi: 10.1111/evo.13422. Epub 2018 Feb 2.


A Novel Hantavirus of the European Mole, Bruges Virus, Is Involved in Frequent Nova Virus Coinfections.

Laenen L, Vergote V, Kafetzopoulou LE, Wawina TB, Vassou D, Cook JA, Hugot JP, Deboutte W, Kang HJ, Witkowski PT, Köppen-Rung P, Krüger DH, Licková M, Stang A, Striešková L, Szemeš T, Markowski J, Hejduk J, Kafetzopoulos D, Van Ranst M, Yanagihara R, Klempa B, Maes P.

Genome Biol Evol. 2018 Jan 1;10(1):45-55. doi: 10.1093/gbe/evx268.


Integrative species delimitation of the widespread North American jumping mice (Zapodinae).

Malaney JL, Demboski JR, Cook JA.

Mol Phylogenet Evol. 2017 Sep;114:137-152. doi: 10.1016/j.ympev.2017.06.001. Epub 2017 Jun 21.


Opinion: Why we need a centralized repository for isotopic data.

Pauli JN, Newsome SD, Cook JA, Harrod C, Steffan SA, Baker CJ, Ben-David M, Bloom D, Bowen GJ, Cerling TE, Cicero C, Cook C, Dohm M, Dharampal PS, Graves G, Gropp R, Hobson KA, Jordan C, MacFadden B, Pilaar Birch S, Poelen J, Ratnasingham S, Russell L, Stricker CA, Uhen MD, Yarnes CT, Hayden B.

Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):2997-3001. doi: 10.1073/pnas.1701742114. No abstract available.


Biospecimen Repositories and Integrated Databases as Critical Infrastructure for Pathogen Discovery and Pathobiology Research.

Dunnum JL, Yanagihara R, Johnson KM, Armien B, Batsaikhan N, Morgan L, Cook JA.

PLoS Negl Trop Dis. 2017 Jan 26;11(1):e0005133. doi: 10.1371/journal.pntd.0005133. eCollection 2017 Jan. No abstract available.

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