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Items: 19

1.

High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® axiom® array.

Mabire C, Duarte J, Darracq A, Pirani A, Rimbert H, Madur D, Combes V, Vitte C, Praud S, Rivière N, Joets J, Pichon JP, Nicolas SD.

BMC Genomics. 2019 Nov 13;20(1):848. doi: 10.1186/s12864-019-6136-9.

2.

Chaos analysis and explicit series solutions to the seasonally forced SIR epidemic model.

Duarte J, Januário C, Martins N, Rogovchenko S, Rogovchenko Y.

J Math Biol. 2019 Jun;78(7):2235-2258. doi: 10.1007/s00285-019-01342-7. Epub 2019 Feb 26.

PMID:
30809691
3.

Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants.

Darracq A, Vitte C, Nicolas S, Duarte J, Pichon JP, Mary-Huard T, Chevalier C, Bérard A, Le Paslier MC, Rogowsky P, Charcosset A, Joets J.

BMC Genomics. 2018 Feb 5;19(1):119. doi: 10.1186/s12864-018-4490-7.

4.

High throughput SNP discovery and genotyping in hexaploid wheat.

Rimbert H, Darrier B, Navarro J, Kitt J, Choulet F, Leveugle M, Duarte J, Rivière N, Eversole K; International Wheat Genome Sequencing Consortium, Le Gouis J; on behalf The BreedWheat Consortium, Davassi A, Balfourier F, Le Paslier MC, Berard A, Brunel D, Feuillet C, Poncet C, Sourdille P, Paux E.

PLoS One. 2018 Jan 2;13(1):e0186329. doi: 10.1371/journal.pone.0186329. eCollection 2018.

5.

A chaotic bursting-spiking transition in a pancreatic beta-cells system: Observation of an interior glucose-induced crisis.

Duarte J, Januario C, Martins N.

Math Biosci Eng. 2017 Aug 1;14(4):821-842. doi: 10.3934/mbe.2017045.

6.

How Complex, Probable, and Predictable is Genetically Driven Red Queen Chaos?

Duarte J, Rodrigues C, Januário C, Martins N, Sardanyés J.

Acta Biotheor. 2015 Dec;63(4):341-61. doi: 10.1007/s10441-015-9254-z. Epub 2015 May 28.

PMID:
26018821
7.

Evolutionary history of Methyltransferase 1 genes in hexaploid wheat.

Thomas M, Pingault L, Poulet A, Duarte J, Throude M, Faure S, Pichon JP, Paux E, Probst AV, Tatout C.

BMC Genomics. 2014 Oct 23;15:922. doi: 10.1186/1471-2164-15-922.

8.

Transcriptome sequencing for high throughput SNP development and genetic mapping in Pea.

Duarte J, Rivière N, Baranger A, Aubert G, Burstin J, Cornet L, Lavaud C, Lejeune-Hénaut I, Martinant JP, Pichon JP, Pilet-Nayel ML, Boutet G.

BMC Genomics. 2014 Feb 12;15:126. doi: 10.1186/1471-2164-15-126.

9.

Avoiding healthy cells extinction in a cancer model.

López ÁG, Sabuco J, Seoane JM, Duarte J, Januário C, Sanjuán MA.

J Theor Biol. 2014 May 21;349:74-81. doi: 10.1016/j.jtbi.2014.01.040. Epub 2014 Feb 7.

PMID:
24512918
10.

Complex dynamics of defective interfering baculoviruses during serial passage in insect cells.

Zwart MP, Pijlman GP, Sardanyés J, Duarte J, Januário C, Elena SF.

J Biol Phys. 2013 Mar;39(2):327-42. doi: 10.1007/s10867-013-9317-9. Epub 2013 Apr 19.

11.

High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L.

Delourme R, Falentin C, Fomeju BF, Boillot M, Lassalle G, André I, Duarte J, Gauthier V, Lucante N, Marty A, Pauchon M, Pichon JP, Ribière N, Trotoux G, Blanchard P, Rivière N, Martinant JP, Pauquet J.

BMC Genomics. 2013 Feb 22;14:120. doi: 10.1186/1471-2164-14-120.

12.

Development and validation of a flax (Linum usitatissimum L.) gene expression oligo microarray.

Fenart S, Ndong YP, Duarte J, Rivière N, Wilmer J, van Wuytswinkel O, Lucau A, Cariou E, Neutelings G, Gutierrez L, Chabbert B, Guillot X, Tavernier R, Hawkins S, Thomasset B.

BMC Genomics. 2010 Oct 21;11:592. doi: 10.1186/1471-2164-11-592.

13.

Quantifying chaos for ecological stoichiometry.

Duarte J, Januário C, Martins N, Sardanyés J.

Chaos. 2010 Sep;20(3):033105. doi: 10.1063/1.3464327.

PMID:
20887045
14.

Chaos and crises in a model for cooperative hunting: a symbolic dynamics approach.

Duarte J, Januário C, Martins N, Sardanyés J.

Chaos. 2009 Dec;19(4):043102. doi: 10.1063/1.3243924.

PMID:
20059198
15.

Topological invariants in the study of a chaotic food chain system.

Duarte J, Januário C, Martins N.

Chaos. 2008 Jun;18(2):023109. doi: 10.1063/1.2903843.

PMID:
18601476
16.

UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.

Mignone F, Grillo G, Licciulli F, Iacono M, Liuni S, Kersey PJ, Duarte J, Saccone C, Pesole G.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D141-6.

17.

The International Protein Index: an integrated database for proteomics experiments.

Kersey PJ, Duarte J, Williams A, Karavidopoulou Y, Birney E, Apweiler R.

Proteomics. 2004 Jul;4(7):1985-8.

PMID:
15221759
18.

Update of NUREBASE: nuclear hormone receptor functional genomics.

Ruau D, Duarte J, Ourjdal T, Perrière G, Laudet V, Robinson-Rechavi M.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D165-7.

19.

NUREBASE: database of nuclear hormone receptors.

Duarte J, Perrière G, Laudet V, Robinson-Rechavi M.

Nucleic Acids Res. 2002 Jan 1;30(1):364-8.

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