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Items: 7


Applying network analysis and Nebula (neighbor-edges based and unbiased leverage algorithm) to ToxCast data.

Ye H, Luo H, Ng HW, Meehan J, Ge W, Tong W, Hong H.

Environ Int. 2016 Apr-May;89-90:81-92. doi: 10.1016/j.envint.2016.01.010. Epub 2016 Jan 28.


Alignment of Short Reads: A Crucial Step for Application of Next-Generation Sequencing Data in Precision Medicine.

Ye H, Meehan J, Tong W, Hong H.

Pharmaceutics. 2015 Nov 23;7(4):523-41. doi: 10.3390/pharmaceutics7040523. Review.


An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era.

Su Z, Fang H, Hong H, Shi L, Zhang W, Zhang W, Zhang Y, Dong Z, Lancashire LJ, Bessarabova M, Yang X, Ning B, Gong B, Meehan J, Xu J, Ge W, Perkins R, Fischer M, Tong W.

Genome Biol. 2014 Dec 3;15(12):523. doi: 10.1186/s13059-014-0523-y.


Whole genome sequencing of 35 individuals provides insights into the genetic architecture of Korean population.

Zhang W, Meehan J, Su Z, Ng HW, Shu M, Luo H, Ge W, Perkins R, Tong W, Hong H.

BMC Bioinformatics. 2014;15 Suppl 11:S6. doi: 10.1186/1471-2105-15-S11-S6. Epub 2014 Oct 21.


The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance.

Wang C, Gong B, Bushel PR, Thierry-Mieg J, Thierry-Mieg D, Xu J, Fang H, Hong H, Shen J, Su Z, Meehan J, Li X, Yang L, Li H, Łabaj PP, Kreil DP, Megherbi D, Gaj S, Caiment F, van Delft J, Kleinjans J, Scherer A, Devanarayan V, Wang J, Yang Y, Qian HR, Lancashire LJ, Bessarabova M, Nikolsky Y, Furlanello C, Chierici M, Albanese D, Jurman G, Riccadonna S, Filosi M, Visintainer R, Zhang KK, Li J, Hsieh JH, Svoboda DL, Fuscoe JC, Deng Y, Shi L, Paules RS, Auerbach SS, Tong W.

Nat Biotechnol. 2014 Sep;32(9):926-32. doi: 10.1038/nbt.3001. Epub 2014 Aug 24.


Data mining tools for Salmonella characterization: application to gel-based fingerprinting analysis.

Zou W, Tang H, Zhao W, Meehan J, Foley SL, Lin WJ, Chen HC, Fang H, Nayak R, Chen JJ.

BMC Bioinformatics. 2013;14 Suppl 14:S15. doi: 10.1186/1471-2105-14-S14-S15. Epub 2013 Oct 9.


Meta-analysis of pulsed-field gel electrophoresis fingerprints based on a constructed Salmonella database.

Zou W, Chen HC, Hise KB, Tang H, Foley SL, Meehan J, Lin WJ, Nayak R, Xu J, Fang H, Chen JJ.

PLoS One. 2013;8(3):e59224. doi: 10.1371/journal.pone.0059224. Epub 2013 Mar 14.

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