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Items: 1 to 20 of 59

1.

Spatial EGFR Dynamics and Metastatic Phenotypes Modulated by Upregulated EphB2 and Src Pathways in Advanced Prostate Cancer.

Liu YL, Horning AM, Lieberman B, Kim M, Lin CK, Hung CN, Chou CW, Wang CM, Lin CL, Kirma NB, Liss MA, Vasisht R, Perillo EP, Blocher K, Horng H, Taverna JA, Ruan J, Yankeelov TE, Dunn AK, Huang TH, Yeh HC, Chen CL.

Cancers (Basel). 2019 Dec 1;11(12). pii: E1910. doi: 10.3390/cancers11121910.

2.

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: genomics with bigger data and wider applications.

Wu Z, Yan J, Wang K, Liu X, Guo Y, Zhi D, Ruan J, Zhao Z.

BMC Genomics. 2019 Feb 4;20(Suppl 1):80. doi: 10.1186/s12864-018-5369-3.

3.

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: bioinformatics towards translational applications.

Liu X, Xie L, Wu Z, Wang K, Zhao Z, Ruan J, Zhi D.

BMC Bioinformatics. 2018 Dec 28;19(Suppl 17):492. doi: 10.1186/s12859-018-2460-3.

4.

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: systems biology on diverse data types.

Wang K, Liu X, Guo Y, Wu Z, Zhi D, Ruan J, Zhao Z.

BMC Syst Biol. 2018 Dec 21;12(Suppl 8):125. doi: 10.1186/s12918-018-0648-9.

5.

Intratumoral CD56bright natural killer cells are associated with improved survival in bladder cancer.

Mukherjee N, Ji N, Hurez V, Curiel TJ, Montgomery MO, Braun AJ, Nicolas M, Aguilera M, Kaushik D, Liu Q, Ruan J, Kendrick KA, Svatek RS.

Oncotarget. 2018 Nov 23;9(92):36492-36502. doi: 10.18632/oncotarget.26362. eCollection 2018 Nov 23.

6.

Adipokines Deregulate Cellular Communication via Epigenetic Repression of Gap Junction Loci in Obese Endometrial Cancer.

Polusani SR, Huang YW, Huang G, Chen CW, Wang CM, Lin LL, Osmulski P, Lucio ND, Liu L, Hsu YT, Zhou Y, Lin CL, Aguilera-Barrantes I, Valente PT, Kost ER, Chen CL, Shim EY, Lee SE, Ruan J, Gaczynska ME, Yan P, Goodfellow PJ, Mutch DG, Jin VX, Nicholson BJ, Huang TH, Kirma NB.

Cancer Res. 2019 Jan 1;79(1):196-208. doi: 10.1158/0008-5472.CAN-18-1615. Epub 2018 Nov 2.

7.

Utilizing networks for differential analysis of chromatin interactions.

Liu L, Ruan J.

J Bioinform Comput Biol. 2017 Dec;15(6):1740008. doi: 10.1142/S021972001740008X. Epub 2017 Oct 19.

8.

Alterations in the placental methylome with maternal obesity and evidence for metabolic regulation.

Mitsuya K, Parker AN, Liu L, Ruan J, Vissers MCM, Myatt L.

PLoS One. 2017 Oct 18;12(10):e0186115. doi: 10.1371/journal.pone.0186115. eCollection 2017.

9.

The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: summary and innovation in genomics.

Zhao Z, Liu Z, Chen K, Guo Y, Allen GI, Zhang J, Jim Zheng W, Ruan J.

BMC Genomics. 2017 Oct 3;18(Suppl 6):703. doi: 10.1186/s12864-017-4018-6.

10.

Logo2PWM: a tool to convert sequence logo to position weight matrix.

Gao Z, Liu L, Ruan J.

BMC Genomics. 2017 Oct 3;18(Suppl 6):709. doi: 10.1186/s12864-017-4023-9.

11.

The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: putting systems biology to work.

Zheng WJ, Ruan J, Xu H, Zhao Z, Liu Z.

BMC Syst Biol. 2017 Oct 3;11(Suppl 5):88. doi: 10.1186/s12918-017-0461-x.

12.

The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools.

Liu Z, Zheng WJ, Allen GI, Liu Y, Ruan J, Zhao Z.

BMC Bioinformatics. 2017 Oct 3;18(Suppl 11):405. doi: 10.1186/s12859-017-1797-3.

13.

Pathway Enrichment Analysis with Networks.

Liu L, Wei J, Ruan J.

Genes (Basel). 2017 Sep 28;8(10). pii: E246. doi: 10.3390/genes8100246.

14.

Computational modeling of in vivo and in vitro protein-DNA interactions by multiple instance learning.

Gao Z, Ruan J.

Bioinformatics. 2017 Jul 15;33(14):2097-2105. doi: 10.1093/bioinformatics/btx115.

15.

EGFR-Dependent Regulated Intramembrane Proteolysis of EpCAM-Response.

Hsu YT, Osmulski P, Wang Y, Huang YW, Liu L, Ruan J, Jin VX, Kirma NB, Gaczynska ME, Huang TH.

Cancer Res. 2017 Apr 1;77(7):1777. doi: 10.1158/0008-5472.CAN-16-3440. Epub 2017 Mar 22. No abstract available.

16.

EpCAM-Regulated Transcription Exerts Influences on Nanomechanical Properties of Endometrial Cancer Cells That Promote Epithelial-to-Mesenchymal Transition.

Hsu YT, Osmulski P, Wang Y, Huang YW, Liu L, Ruan J, Jin VX, Kirma NB, Gaczynska ME, Huang TH.

Cancer Res. 2016 Nov 1;76(21):6171-6182. Epub 2016 Aug 28. Erratum in: Cancer Res. 2017 Apr 1;77(7):1778.

17.

Comparison of attitudes toward disability and people with disability among caregivers, the public, and people with disability: findings from a cross-sectional survey.

Zheng Q, Tian Q, Hao C, Gu J, Tao J, Liang Z, Chen X, Fang J, Ruan J, Ai Q, Hao Y.

BMC Public Health. 2016 Sep 29;16(1):1024. doi: 10.1186/s12889-016-3670-0.

18.

Advancing Systems Biology in the International Conference on Intelligent Biology and Medicine (ICIBM) 2015.

Zhao Z, Liu Y, Huang Y, Huang K, Ruan J.

BMC Syst Biol. 2016 Aug 26;10 Suppl 3:61. doi: 10.1186/s12918-016-0305-0.

19.

Intelligent biology and medicine in 2015: advancing interdisciplinary education, collaboration, and data science.

Huang K, Liu Y, Huang Y, Li L, Cooper L, Ruan J, Zhao Z.

BMC Genomics. 2016 Aug 22;17 Suppl 7:524. doi: 10.1186/s12864-016-2893-x.

20.

A novel algorithm for network-based prediction of cancer recurrence.

Ruan J, Jahid MJ, Gu F, Lei C, Huang YW, Hsu YT, Mutch DG, Chen CL, Kirma NB, Huang TH.

Genomics. 2019 Jan;111(1):17-23. doi: 10.1016/j.ygeno.2016.07.005. Epub 2016 Jul 21.

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