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Items: 13

1.

An Efficient Algorithm for the Rooted Triplet Distance Between Galled Trees.

Jansson J, Rajaby R, Sung WK.

J Comput Biol. 2019 Sep;26(9):893-907. doi: 10.1089/cmb.2019.0033. Epub 2019 Apr 16.

PMID:
30990336
2.

Determining the minimum number of protein-protein interactions required to support known protein complexes.

Nakajima N, Hayashida M, Jansson J, Maruyama O, Akutsu T.

PLoS One. 2018 Apr 26;13(4):e0195545. doi: 10.1371/journal.pone.0195545. eCollection 2018.

3.

Determining the Consistency of Resolved Triplets and Fan Triplets.

Jansson J, Lingas A, Rajaby R, Sung WK.

J Comput Biol. 2018 Jul;25(7):740-754. doi: 10.1089/cmb.2017.0256. Epub 2018 Feb 16.

PMID:
29451395
4.

A More Practical Algorithm for the Rooted Triplet Distance.

Jansson J, Rajaby R.

J Comput Biol. 2017 Feb;24(2):106-126. doi: 10.1089/cmb.2016.0185. Epub 2016 Dec 16.

PMID:
27983874
5.

Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree.

Jansson J, Rajaby R, Shen C, Sung WK.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Jan-Feb;15(1):15-26. doi: 10.1109/TCBB.2016.2609923. Epub 2016 Sep 20.

PMID:
27662679
6.

Polynomial-time algorithms for building a consensus MUL-tree.

Cui Y, Jansson J, Sung WK.

J Comput Biol. 2012 Sep;19(9):1073-88. doi: 10.1089/cmb.2012.0008.

7.

Flexible taxonomic assignment of ambiguous sequencing reads.

Clemente JC, Jansson J, Valiente G.

BMC Bioinformatics. 2011 Jan 7;12:8. doi: 10.1186/1471-2105-12-8.

8.

Computing a smallest multilabeled phylogenetic tree from rooted triplets.

Guillemot S, Jansson J, Sung WK.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Jul-Aug;8(4):1141-7. doi: 10.1109/TCBB.2010.77.

PMID:
20733243
9.

Linear-time protein 3-D structure searching with insertions and deletions.

Shibuya T, Jansson J, Sadakane K.

Algorithms Mol Biol. 2010 Jan 4;5:7. doi: 10.1186/1748-7188-5-7.

10.

Accurate taxonomic assignment of short pyrosequencing reads.

Clemente JC, Jansson J, Valiente G.

Pac Symp Biocomput. 2010:3-9.

11.

Reconstructing an ultrametric galled phylogenetic network from a distance matrix.

Chan HL, Jansson J, Lam TW, Yiu SM.

J Bioinform Comput Biol. 2006 Aug;4(4):807-32.

PMID:
17007069
12.

Local gapped subforest alignment and its application in finding RNA structural motifs.

Jansson J, Hieu NT, Sung WK.

J Comput Biol. 2006 Apr;13(3):702-18.

PMID:
16706720
13.

Inferring phylogenetic relationships avoiding forbidden rooted triplets.

He YJ, Huynh TN, Jansson J, Sung WK.

J Bioinform Comput Biol. 2006 Feb;4(1):59-74.

PMID:
16568542

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