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Items: 1 to 20 of 193

1.

Genome sequence of the chestnut blight fungus Cryphonectria parasitica EP155: A fundamental resource for an archetypical invasive plant pathogen.

Crouch JA, Dawe A, Aerts A, Barry K, Churchill ACL, Grimwood J, Hillman B, Milgroom MG, Pangilinan J, Smith M, Salamov A, Schmutz J, Yadav J, Grigoriev IV, Nuss D.

Phytopathology. 2020 Mar 24. doi: 10.1094/PHYTO-12-19-0478-A. [Epub ahead of print]

PMID:
32207662
2.

Genetic Associations in Four Decades of Multi-environment Trials Reveal Agronomic Trait Evolution in Common Bean.

MacQueen AH, White JW, Lee R, Osorno JM, Schmutz J, Miklas PN, Myers J, McClean PE, Juenger TE.

Genetics. 2020 Mar 23. pii: genetics.303038.2020. doi: 10.1534/genetics.120.303038. [Epub ahead of print]

3.

Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism.

Zhang J, Hu R, Sreedasyam A, Garcia TM, Lipzen A, Wang M, Yerramsetty P, Liu D, Ng V, Schmutz J, Cushman JC, Borland AM, Pasha A, Provart NJ, Chen JG, Muchero W, Tuskan GA, Yang X.

Gigascience. 2020 Mar 1;9(3). pii: giaa018. doi: 10.1093/gigascience/giaa018.

4.

Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9.

Dong OX, Yu S, Jain R, Zhang N, Duong PQ, Butler C, Li Y, Lipzen A, Martin JA, Barry KW, Schmutz J, Tian L, Ronald PC.

Nat Commun. 2020 Mar 4;11(1):1178. doi: 10.1038/s41467-020-14981-y.

5.

A willow sex chromosome reveals convergent evolution of complex palindromic repeats.

Zhou R, Macaya-Sanz D, Carlson CH, Schmutz J, Jenkins JW, Kudrna D, Sharma A, Sandor L, Shu S, Barry K, Tuskan GA, Ma T, Liu J, Olson M, Smart LB, DiFazio SP.

Genome Biol. 2020 Feb 14;21(1):38. doi: 10.1186/s13059-020-1952-4.

6.

Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP-TF and determination of its transcriptional effect.

Xie M, Zhang J, Singan VR, McGranahan MJ, LaFayette PR, Jawdy SS, Engle N, Doeppke C, Tschaplinski TJ, Davis MF, Lindquist E, Barry K, Schmutz J, Parrott WA, Chen F, Tuskan GA, Chen JG, Muchero W.

Plant Direct. 2020 Jan 3;4(1):e00178. doi: 10.1002/pld3.178. eCollection 2020 Jan.

7.

Optimizing genomic selection for blight resistance in American chestnut backcross populations: A trade-off with American chestnut ancestry implies resistance is polygenic.

Westbrook JW, Zhang Q, Mandal MK, Jenkins EV, Barth LE, Jenkins JW, Grimwood J, Schmutz J, Holliday JA.

Evol Appl. 2019 Dec 29;13(1):31-47. doi: 10.1111/eva.12886. eCollection 2020 Jan.

8.

Genome sequence of the model rice variety KitaakeX.

Jain R, Jenkins J, Shu S, Chern M, Martin JA, Copetti D, Duong PQ, Pham NT, Kudrna DA, Talag J, Schackwitz WS, Lipzen AM, Dilworth D, Bauer D, Grimwood J, Nelson CR, Xing F, Xie W, Barry KW, Wing RA, Schmutz J, Li G, Ronald PC.

BMC Genomics. 2019 Nov 27;20(1):905. doi: 10.1186/s12864-019-6262-4.

9.

PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens.

Fernandez-Pozo N, Haas FB, Meyberg R, Ullrich KK, Hiss M, Perroud PF, Hanke S, Kratz V, Powell AF, Vesty EF, Daum CG, Zane M, Lipzen A, Sreedasyam A, Grimwood J, Coates JC, Barry K, Schmutz J, Mueller LA, Rensing SA.

Plant J. 2019 Nov 12. doi: 10.1111/tpj.14607. [Epub ahead of print]

PMID:
31714620
10.

Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence.

Furches A, Kainer D, Weighill D, Large A, Jones P, Walker AM, Romero J, Gazolla JGFM, Joubert W, Shah M, Streich J, Ranjan P, Schmutz J, Sreedasyam A, Macaya-Sanz D, Zhao N, Martin MZ, Rao X, Dixon RA, DiFazio S, Tschaplinski TJ, Chen JG, Tuskan GA, Jacobson D.

Front Plant Sci. 2019 Oct 8;10:1249. doi: 10.3389/fpls.2019.01249. eCollection 2019.

11.

SoyCSN: Soybean context-specific network analysis and prediction based on tissue-specific transcriptome data.

Wang J, Hossain MS, Lyu Z, Schmutz J, Stacey G, Xu D, Joshi T.

Plant Direct. 2019 Sep 17;3(9):e00167. doi: 10.1002/pld3.167. eCollection 2019 Sep.

12.

Overexpression of a Prefoldin β subunit gene reduces biomass recalcitrance in the bioenergy crop Populus.

Zhang J, Xie M, Li M, Ding J, Pu Y, Bryan AC, Rottmann W, Winkeler KA, Collins CM, Singan V, Lindquist EA, Jawdy SS, Gunter LE, Engle NL, Yang X, Barry K, Tschaplinski TJ, Schmutz J, Tuskan GA, Muchero W, Chen JG.

Plant Biotechnol J. 2020 Mar;18(3):859-871. doi: 10.1111/pbi.13254. Epub 2019 Sep 27.

13.

High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome.

Qi P, Eudy D, Schnable JC, Schmutz J, Raymer PL, Devos KM.

Sci Rep. 2019 Aug 21;9(1):12183. doi: 10.1038/s41598-019-48257-3.

14.

Construction and comparison of three reference-quality genome assemblies for soybean.

Valliyodan B, Cannon SB, Bayer PE, Shu S, Brown AV, Ren L, Jenkins J, Chung CY, Chan TF, Daum CG, Plott C, Hastie A, Baruch K, Barry KW, Huang W, Patil G, Varshney RK, Hu H, Batley J, Yuan Y, Song Q, Stupar RM, Goodstein DM, Stacey G, Lam HM, Jackson SA, Schmutz J, Grimwood J, Edwards D, Nguyen HT.

Plant J. 2019 Dec;100(5):1066-1082. doi: 10.1111/tpj.14500. Epub 2019 Oct 28.

PMID:
31433882
15.

Correction to: Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta.

Wang B, Mojica JP, Perera N, Lee CR, Lovell JT, Sharma A, Adam C, Lipzen A, Barry K, Rokhsar DS, Schmutz J, Mitchell-Olds T.

Genome Biol. 2019 Aug 9;20(1):161. doi: 10.1186/s13059-019-1781-5.

16.

Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase.

Labbé J, Muchero W, Czarnecki O, Wang J, Wang X, Bryan AC, Zheng K, Yang Y, Xie M, Zhang J, Wang D, Meidl P, Wang H, Morrell-Falvey JL, Cope KR, Maia LGS, Ané JM, Mewalal R, Jawdy SS, Gunter LE, Schackwitz W, Martin J, Le Tacon F, Li T, Zhang Z, Ranjan P, Lindquist E, Yang X, Jacobson DA, Tschaplinski TJ, Barry K, Schmutz J, Chen JG, Tuskan GA.

Nat Plants. 2019 Jul;5(7):676-680. doi: 10.1038/s41477-019-0469-x. Epub 2019 Jul 8.

PMID:
31285560
17.

Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta.

Wang B, Mojica JP, Perera N, Lee CR, Lovell JT, Sharma A, Adam C, Lipzen A, Barry K, Rokhsar DS, Schmutz J, Mitchell-Olds T.

Genome Biol. 2019 Jun 21;20(1):126. doi: 10.1186/s13059-019-1729-9. Erratum in: Genome Biol. 2019 Aug 9;20(1):161.

18.

Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation.

Weighill D, Macaya-Sanz D, DiFazio SP, Joubert W, Shah M, Schmutz J, Sreedasyam A, Tuskan G, Jacobson D.

Front Genet. 2019 May 31;10:487. doi: 10.3389/fgene.2019.00487. eCollection 2019.

19.

QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient.

Lowry DB, Lovell JT, Zhang L, Bonnette J, Fay PA, Mitchell RB, Lloyd-Reilley J, Boe AR, Wu Y, Rouquette FM Jr, Wynia RL, Weng X, Behrman KD, Healey A, Barry K, Lipzen A, Bauer D, Sharma A, Jenkins J, Schmutz J, Fritschi FB, Juenger TE.

Proc Natl Acad Sci U S A. 2019 Jun 25;116(26):12933-12941. doi: 10.1073/pnas.1821543116. Epub 2019 Jun 10.

20.

Genome mapping of quantitative trait loci (QTL) controlling domestication traits of intermediate wheatgrass (Thinopyrum intermedium).

Larson S, DeHaan L, Poland J, Zhang X, Dorn K, Kantarski T, Anderson J, Schmutz J, Grimwood J, Jenkins J, Shu S, Crain J, Robbins M, Jensen K.

Theor Appl Genet. 2019 Aug;132(8):2325-2351. doi: 10.1007/s00122-019-03357-6. Epub 2019 Jun 6.

PMID:
31172227

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