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Causality Analysis and Cell Network Modeling of Spatial Calcium Signaling Patterns in Liver Lobules.

Verma A, Antony AN, Ogunnaike BA, Hoek JB, Vadigepalli R.

Front Physiol. 2018 Oct 4;9:1377. doi: 10.3389/fphys.2018.01377. eCollection 2018.


Cellular network modeling and single cell gene expression analysis reveals novel hepatic stellate cell phenotypes controlling liver regeneration dynamics.

Cook D, Achanta S, Hoek JB, Ogunnaike BA, Vadigepalli R.

BMC Syst Biol. 2018 Oct 3;12(1):86. doi: 10.1186/s12918-018-0605-7.


Epidemiology of Moderate Alcohol Consumption and Breast Cancer: Association or Causation?

Zakhari S, Hoek JB.

Cancers (Basel). 2018 Sep 22;10(10). pii: E349. doi: 10.3390/cancers10100349. Review.


Single-Cell Gene Expression Analysis Identifies Chronic Alcohol-Mediated Shift in Hepatocyte Molecular States After Partial Hepatectomy.

Achanta S, Verma A, Srivastava A, Nilakantan H, Hoek JB, Vadigepalli R.

Gene Expr. 2019 Apr 18;19(2):97-119. doi: 10.3727/105221618X15361728786767. Epub 2018 Sep 6.


Metabolic reprogramming of murine cardiomyocytes during autophagy requires the extracellular nutrient sensor decorin.

Gubbiotti MA, Seifert E, Rodeck U, Hoek JB, Iozzo RV.

J Biol Chem. 2018 Oct 26;293(43):16940-16950. doi: 10.1074/jbc.RA118.004563. Epub 2018 Jul 26.


Introduction to the Virtual Issue Alcohol and Epigenetic Regulation: Do the Products of Alcohol Metabolism Drive Epigenetic Control of Gene Expression in Alcohol-Related Disorders?

Vadigepalli R, Hoek JB.

Alcohol Clin Exp Res. 2018 May;42(5):845-848. doi: 10.1111/acer.13630. Epub 2018 Apr 6. No abstract available.


Lipid Synthesis Is Required to Resolve Endoplasmic Reticulum Stress and Limit Fibrotic Responses in the Lung.

Romero F, Hong X, Shah D, Kallen CB, Rosas I, Guo Z, Schriner D, Barta J, Shaghaghi H, Hoek JB, Mesaros C, Choi AM, Snyder NW, Summer R.

Am J Respir Cell Mol Biol. 2018 Aug;59(2):225-236. doi: 10.1165/rcmb.2017-0340OC.


Alcohol-Mediated Missplicing of Mcl-1 Pre-mRNA is Involved in Neurotoxicity.

Sariyer R, De-Simone FI, Donadoni M, Hoek JB, Chang SL, Sariyer IK.

Alcohol Clin Exp Res. 2017 Oct;41(10):1715-1724. doi: 10.1111/acer.13474. Epub 2017 Sep 1.


The path from mitochondrial ROS to aging runs through the mitochondrial permeability transition pore.

Rottenberg H, Hoek JB.

Aging Cell. 2017 Oct;16(5):943-955. doi: 10.1111/acel.12650. Epub 2017 Jul 31. Review.


Biochemical Effects of Exercise on a Fasciocutaneous Flap in a Rat Model.

Aksamitiene E, Baker AL, Roy S, Hota S, Zhang LH, Rodin J, Hobelmann K, Hoek JB, Pribitkin EA.

JAMA Facial Plast Surg. 2017 Jul 1;19(4):303-310. doi: 10.1001/jamafacial.2016.2162.


Chronic alcohol feeding potentiates hormone-induced calcium signalling in hepatocytes.

Bartlett PJ, Antony AN, Agarwal A, Hilly M, Prince VL, Combettes L, Hoek JB, Gaspers LD.

J Physiol. 2017 May 15;595(10):3143-3164. doi: 10.1113/JP273891. Epub 2017 Apr 18.


Mitochondrial fusion dynamics is robust in the heart and depends on calcium oscillations and contractile activity.

Eisner V, Cupo RR, Gao E, Csordás G, Slovinsky WS, Paillard M, Cheng L, Ibetti J, Chen SR, Chuprun JK, Hoek JB, Koch WJ, Hajnóczky G.

Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):E859-E868. doi: 10.1073/pnas.1617288114. Epub 2017 Jan 17.


Pattern analysis uncovers a chronic ethanol-induced disruption of the switch-like dynamics of C/EBP-β and C/EBP-α genome-wide binding during liver regeneration.

Kuttippurathu L, Patra B, Cook D, Hoek JB, Vadigepalli R.

Physiol Genomics. 2017 Jan 1;49(1):11-26. doi: 10.1152/physiolgenomics.00097.2016. Epub 2016 Nov 4.


Inhibition of miR-21 rescues liver regeneration after partial hepatectomy in ethanol-fed rats.

Juskeviciute E, Dippold RP, Antony AN, Swarup A, Vadigepalli R, Hoek JB.

Am J Physiol Gastrointest Liver Physiol. 2016 Nov 1;311(5):G794-G806. doi: 10.1152/ajpgi.00292.2016. Epub 2016 Sep 15.


Computational Modeling of Spatiotemporal Ca(2+) Signal Propagation Along Hepatocyte Cords.

Verma A, Makadia H, Hoek JB, Ogunnaike BA, Vadigepalli R.

IEEE Trans Biomed Eng. 2016 Oct;63(10):2047-55. doi: 10.1109/TBME.2016.2550045. Epub 2016 Apr 4.


Synergistic effects of ascorbate and sorafenib in hepatocellular carcinoma: New insights into ascorbate cytotoxicity.

Rouleau L, Antony AN, Bisetto S, Newberg A, Doria C, Levine M, Monti DA, Hoek JB.

Free Radic Biol Med. 2016 Jun;95:308-322. doi: 10.1016/j.freeradbiomed.2016.03.031. Epub 2016 Mar 30.


A novel comparative pattern analysis approach identifies chronic alcohol mediated dysregulation of transcriptomic dynamics during liver regeneration.

Kuttippurathu L, Juskeviciute E, Dippold RP, Hoek JB, Vadigepalli R.

BMC Genomics. 2016 Mar 25;17:260. doi: 10.1186/s12864-016-2492-x.


MICU1 regulation of mitochondrial Ca(2+) uptake dictates survival and tissue regeneration.

Antony AN, Paillard M, Moffat C, Juskeviciute E, Correnti J, Bolon B, Rubin E, Csordás G, Seifert EL, Hoek JB, Hajnóczky G.

Nat Commun. 2016 Mar 9;7:10955. doi: 10.1038/ncomms10955.


In Vivo Zonal Variation and Liver Cell-Type Specific NF-κB Localization after Chronic Adaptation to Ethanol and following Partial Hepatectomy.

Nilakantan H, Kuttippurathu L, Parrish A, Hoek JB, Vadigepalli R.

PLoS One. 2015 Oct 9;10(10):e0140236. doi: 10.1371/journal.pone.0140236. eCollection 2015.

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