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Items: 1 to 20 of 113


Computational redesign of the Escherichia coli ribose-binding protein ligand binding pocket for 1,3-cyclohexanediol and cyclohexanol.

Tavares D, Reimer A, Roy S, Joublin A, Sentchilo V, van der Meer JR.

Sci Rep. 2019 Nov 15;9(1):16940. doi: 10.1038/s41598-019-53507-5.


Transient Replication in Specialized Cells Favors Transfer of an Integrative and Conjugative Element.

Delavat F, Moritz R, van der Meer JR.

mBio. 2019 Jun 11;10(3). pii: e01133-19. doi: 10.1128/mBio.01133-19.


Archaeorhizomycetes Spatial Distribution in Soils Along Wide Elevational and Environmental Gradients Reveal Co-abundance Patterns With Other Fungal Saprobes and Potential Weathering Capacities.

Pinto-Figueroa EA, Seddon E, Yashiro E, Buri A, Niculita-Hirzel H, van der Meer JR, Guisan A.

Front Microbiol. 2019 Apr 4;10:656. doi: 10.3389/fmicb.2019.00656. eCollection 2019.


The urgent need for microbiology literacy in society.

Timmis K, Cavicchioli R, Garcia JL, Nogales B, Chavarría M, Stein L, McGenity TJ, Webster N, Singh BK, Handelsman J, de Lorenzo V, Pruzzo C, Timmis J, Martín JLR, Verstraete W, Jetten M, Danchin A, Huang W, Gilbert J, Lal R, Santos H, Lee SY, Sessitsch A, Bonfante P, Gram L, Lin RTP, Ron E, Karahan ZC, van der Meer JR, Artunkal S, Jahn D, Harper L.

Environ Microbiol. 2019 May;21(5):1513-1528. doi: 10.1111/1462-2920.14611. Epub 2019 Apr 11. No abstract available.


Probing chemotaxis activity in Escherichia coli using fluorescent protein fusions.

Roggo C, Carraro N, van der Meer JR.

Sci Rep. 2019 Mar 7;9(1):3845. doi: 10.1038/s41598-019-40655-x.


Bridging the Holistic-Reductionist Divide in Microbial Ecology.

Tecon R, Mitri S, Ciccarese D, Or D, van der Meer JR, Johnson DR.

mSystems. 2019 Feb 5;4(1). pii: e00265-18. doi: 10.1128/mSystems.00265-18. eCollection 2019 Jan-Feb.


Genomic Islands Confer Heavy Metal Resistance in Mucilaginibacter kameinonensis and Mucilaginibacter rubeus Isolated from a Gold/Copper Mine.

Li YP, Carraro N, Yang N, Liu B, Xia X, Feng R, Saquib Q, Al-Wathnani HA, van der Meer JR, Rensing C.

Genes (Basel). 2018 Nov 23;9(12). pii: E573. doi: 10.3390/genes9120573.


Heterologous Expression of Pseudomonas putida Methyl-Accepting Chemotaxis Proteins Yields Escherichia coli Cells Chemotactic to Aromatic Compounds.

Roggo C, Clerc EE, Hadadi N, Carraro N, Stocker R, van der Meer JR.

Appl Environ Microbiol. 2018 Aug 31;84(18). pii: e01362-18. doi: 10.1128/AEM.01362-18. Print 2018 Sep 15.


Meta-scale mountain grassland observatories uncover commonalities as well as specific interactions among plant and non-rhizosphere soil bacterial communities.

Yashiro E, Pinto-Figueroa E, Buri A, Spangenberg JE, Adatte T, Niculita-Hirzel H, Guisan A, van der Meer JR.

Sci Rep. 2018 Apr 10;8(1):5758. doi: 10.1038/s41598-018-24253-x.


Physiological and transcriptome changes induced by Pseudomonas putida acquisition of an integrative and conjugative element.

Miyazaki R, Yano H, Sentchilo V, van der Meer JR.

Sci Rep. 2018 Apr 3;8(1):5550. doi: 10.1038/s41598-018-23858-6.


Quantitative chemical biosensing by bacterial chemotaxis in microfluidic chips.

Roggo C, Picioreanu C, Richard X, Mazza C, van Lintel H, van der Meer JR.

Environ Microbiol. 2018 Jan;20(1):241-258. doi: 10.1111/1462-2920.13982. Epub 2017 Dec 21.


Complete alanine scanning of the Escherichia coli RbsB ribose binding protein reveals residues important for chemoreceptor signaling and periplasmic abundance.

Reimer A, Maffenbeier V, Dubey M, Sentchilo V, Tavares D, Gil MH, Beggah S, van der Meer JR.

Sci Rep. 2017 Aug 15;7(1):8245. doi: 10.1038/s41598-017-08035-5.


Draft Genome Sequence of Microbacterium foliorum Strain 122 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site.

Lumactud R, Fulthorpe R, Sentchilo V, van der Meer JR.

Genome Announc. 2017 May 25;5(21). pii: e00434-17. doi: 10.1128/genomeA.00434-17.


Editorial overview: Environmental biotechnology.

van der Meer JR, Gu MB.

Curr Opin Biotechnol. 2017 Jun;45:ix-xi. doi: 10.1016/j.copbio.2017.05.001. Epub 2017 May 17. No abstract available.


Draft Genome Sequence of Plantibacterflavus Strain 251 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site.

Lumactud R, Fulthorpe R, Sentchilo V, van der Meer JR.

Genome Announc. 2017 Apr 27;5(17). pii: e00276-17. doi: 10.1128/genomeA.00276-17.


The hidden life of integrative and conjugative elements.

Delavat F, Miyazaki R, Carraro N, Pradervand N, van der Meer JR.

FEMS Microbiol Rev. 2017 Jul 1;41(4):512-537. doi: 10.1093/femsre/fux008. Review.


Miniaturized and integrated whole cell living bacterial sensors in field applicable autonomous devices.

Roggo C, van der Meer JR.

Curr Opin Biotechnol. 2017 Jun;45:24-33. doi: 10.1016/j.copbio.2016.11.023. Epub 2017 Jan 11. Review.


The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand.

Morales M, Sentchilo V, Bertelli C, Komljenovic A, Kryuchkova-Mostacci N, Bourdilloud A, Linke B, Goesmann A, Harshman K, Segers F, Delapierre F, Fiorucci D, Seppey M, Trofimenco E, Berra P, El Taher A, Loiseau C, Roggero D, Sulfiotti M, Etienne A, Ruiz Buendia G, Pillard L, Escoriza A, Moritz R, Schneider C, Alfonso E, Ben Jeddou F, Selmoni O, Resch G, Greub G, Emery O, Dubey M, Pillonel T, Robinson-Rechavi M, van der Meer JR.

PLoS One. 2016 Nov 3;11(11):e0165850. doi: 10.1371/journal.pone.0165850. eCollection 2016.


Local Environmental Factors Drive Divergent Grassland Soil Bacterial Communities in the Western Swiss Alps.

Yashiro E, Pinto-Figueroa E, Buri A, Spangenberg JE, Adatte T, Niculita-Hirzel H, Guisan A, van der Meer JR.

Appl Environ Microbiol. 2016 Oct 14;82(21):6303-6316. Print 2016 Nov 1.


Towards improved biomonitoring tools for an intensified sustainable multi-use environment.

van der Meer JR.

Microb Biotechnol. 2016 Sep;9(5):658-65. doi: 10.1111/1751-7915.12395. Epub 2016 Jul 29. Review.

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