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Items: 15

1.

The Biological Object Notation (BON): a structured file format for biological data.

Buchmann JP, Fourment M, Holmes EC.

Sci Rep. 2018 Jun 25;8(1):9644. doi: 10.1038/s41598-018-28016-6.

2.

Virological Sampling of Inaccessible Wildlife with Drones.

Geoghegan JL, Pirotta V, Harvey E, Smith A, Buchmann JP, Ostrowski M, Eden JS, Harcourt R, Holmes EC.

Viruses. 2018 Jun 2;10(6). pii: E300. doi: 10.3390/v10060300.

3.

17th Century Variola Virus Reveals the Recent History of Smallpox.

Duggan AT, Perdomo MF, Piombino-Mascali D, Marciniak S, Poinar D, Emery MV, Buchmann JP, Duchêne S, Jankauskas R, Humphreys M, Golding GB, Southon J, Devault A, Rouillard JM, Sahl JW, Dutour O, Hedman K, Sajantila A, Smith GL, Holmes EC, Poinar HN.

Curr Biol. 2016 Dec 19;26(24):3407-3412. doi: 10.1016/j.cub.2016.10.061. Epub 2016 Dec 8.

4.

Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defense responses to Erwinia amylovora pathogen infection.

Kamber T, Buchmann JP, Pothier JF, Smits TH, Wicker T, Duffy B.

Sci Rep. 2016 Feb 17;6:21600. doi: 10.1038/srep21600.

5.

Cell Walls and the Convergent Evolution of the Viral Envelope.

Buchmann JP, Holmes EC.

Microbiol Mol Biol Rev. 2015 Dec;79(4):403-18. doi: 10.1128/MMBR.00017-15. Review.

6.

Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic.

Simon-Loriere E, Faye O, Faye O, Koivogui L, Magassouba N, Keita S, Thiberge JM, Diancourt L, Bouchier C, Vandenbogaert M, Caro V, Fall G, Buchmann JP, Matranga CB, Sabeti PC, Manuguerra JC, Holmes EC, Sall AA.

Nature. 2015 Aug 6;524(7563):102-4. doi: 10.1038/nature14612. Epub 2015 Jun 24.

PMID:
26106863
7.

Analysis of CACTA transposases reveals intron loss as major factor influencing their exon/intron structure in monocotyledonous and eudicotyledonous hosts.

Buchmann JP, Löytynoja A, Wicker T, Schulman AH.

Mob DNA. 2014 Sep 1;5:24. doi: 10.1186/1759-8753-5-24. eCollection 2014.

8.

The Tvv1 retrotransposon family is conserved between plant genomes separated by over 100 million years.

Moisy C, Schulman AH, Kalendar R, Buchmann JP, Pelsy F.

Theor Appl Genet. 2014 May;127(5):1223-35. doi: 10.1007/s00122-014-2293-z. Epub 2014 Mar 4.

PMID:
24590356
9.

The wheat powdery mildew genome shows the unique evolution of an obligate biotroph.

Wicker T, Oberhaensli S, Parlange F, Buchmann JP, Shatalina M, Roffler S, Ben-David R, Doležel J, Šimková H, Schulze-Lefert P, Spanu PD, Bruggmann R, Amselem J, Quesneville H, Ver Loren van Themaat E, Paape T, Shimizu KK, Keller B.

Nat Genet. 2013 Sep;45(9):1092-6. doi: 10.1038/ng.2704. Epub 2013 Jul 14.

10.

Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno.

Shatalina M, Wicker T, Buchmann JP, Oberhaensli S, Simková H, Doležel J, Keller B.

Plant Biotechnol J. 2013 Jan;11(1):23-32. doi: 10.1111/pbi.12003. Epub 2012 Oct 10.

11.

Inter-species sequence comparison of Brachypodium reveals how transposon activity corrodes genome colinearity.

Buchmann JP, Matsumoto T, Stein N, Keller B, Wicker T.

Plant J. 2012 Aug;71(4):550-63. doi: 10.1111/j.1365-313X.2012.05007.x. Epub 2012 Jun 18.

12.

Comparative sequence analysis of wheat and barley powdery mildew fungi reveals gene colinearity, dates divergence and indicates host-pathogen co-evolution.

Oberhaensli S, Parlange F, Buchmann JP, Jenny FH, Abbott JC, Burgis TA, Spanu PD, Keller B, Wicker T.

Fungal Genet Biol. 2011 Mar;48(3):327-34. doi: 10.1016/j.fgb.2010.10.003. Epub 2010 Oct 16.

PMID:
20955813
13.

Patching gaps in plant genomes results in gene movement and erosion of colinearity.

Wicker T, Buchmann JP, Keller B.

Genome Res. 2010 Sep;20(9):1229-37. doi: 10.1101/gr.107284.110. Epub 2010 Jun 7.

14.

Fine mapping and syntenic integration of the semi-dwarfing gene sdw3 of barley.

Vu GT, Wicker T, Buchmann JP, Chandler PM, Matsumoto T, Graner A, Stein N.

Funct Integr Genomics. 2010 Nov;10(4):509-21. doi: 10.1007/s10142-010-0173-4. Epub 2010 May 13.

PMID:
20464438
15.

Genome sequencing and analysis of the model grass Brachypodium distachyon.

International Brachypodium Initiative.

Nature. 2010 Feb 11;463(7282):763-8. doi: 10.1038/nature08747.

PMID:
20148030

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