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Items: 14

1.

The genomic footprint of sexual conflict.

Sayadi A, Martinez Barrio A, Immonen E, Dainat J, Berger D, Tellgren-Roth C, Nystedt B, Arnqvist G.

Nat Ecol Evol. 2019 Dec;3(12):1725-1730. doi: 10.1038/s41559-019-1041-9. Epub 2019 Nov 18.

PMID:
31740847
2.

Assembly and Analysis of the Genome Sequence of the Yeast Brettanomyces naardenensis CBS 7540.

Tiukova IA, Jiang H, Dainat J, Hoeppner MP, Lantz H, Piskur J, Sandgren M, Nielsen J, Gu Z, Passoth V.

Microorganisms. 2019 Oct 26;7(11). pii: E489. doi: 10.3390/microorganisms7110489.

3.

Pervasive hybridizations in the history of wheat relatives.

Glémin S, Scornavacca C, Dainat J, Burgarella C, Viader V, Ardisson M, Sarah G, Santoni S, David J, Ranwez V.

Sci Adv. 2019 May 1;5(5):eaav9188. doi: 10.1126/sciadv.aav9188. eCollection 2019 May.

4.

Chromosomal genome assembly of the ethanol production strain CBS 11270 indicates a highly dynamic genome structure in the yeast species Brettanomyces bruxellensis.

Tiukova IA, Pettersson ME, Hoeppner MP, Olsen RA, Käller M, Nielsen J, Dainat J, Lantz H, Söderberg J, Passoth V.

PLoS One. 2019 May 1;14(5):e0215077. doi: 10.1371/journal.pone.0215077. eCollection 2019.

5.

EMBLmyGFF3: a converter facilitating genome annotation submission to European Nucleotide Archive.

Norling M, Jareborg N, Dainat J.

BMC Res Notes. 2018 Aug 13;11(1):584. doi: 10.1186/s13104-018-3686-x.

6.

Complete Genome Sequences of the Xylose-Fermenting Candida intermedia Strains CBS 141442 and PYCC 4715.

Moreno AD, Tellgren-Roth C, Soler L, Dainat J, Olsson L, Geijer C.

Genome Announc. 2017 Apr 6;5(14). pii: e00138-17. doi: 10.1128/genomeA.00138-17.

7.

Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species.

Nielsen JC, Grijseels S, Prigent S, Ji B, Dainat J, Nielsen KF, Frisvad JC, Workman M, Nielsen J.

Nat Microbiol. 2017 Apr 3;2:17044. doi: 10.1038/nmicrobiol.2017.44.

PMID:
28368369
8.

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing.

Martinez Barrio A, Lamichhaney S, Fan G, Rafati N, Pettersson M, Zhang H, Dainat J, Ekman D, Höppner M, Jern P, Martin M, Nystedt B, Liu X, Chen W, Liang X, Shi C, Fu Y, Ma K, Zhan X, Feng C, Gustafson U, Rubin CJ, Sällman Almén M, Blass M, Casini M, Folkvord A, Laikre L, Ryman N, Ming-Yuen Lee S, Xu X, Andersson L.

Elife. 2016 May 3;5. pii: e12081. doi: 10.7554/eLife.12081.

9.

The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions.

Engel P, Kwong WK, McFrederick Q, Anderson KE, Barribeau SM, Chandler JA, Cornman RS, Dainat J, de Miranda JR, Doublet V, Emery O, Evans JD, Farinelli L, Flenniken ML, Granberg F, Grasis JA, Gauthier L, Hayer J, Koch H, Kocher S, Martinson VG, Moran N, Munoz-Torres M, Newton I, Paxton RJ, Powell E, Sadd BM, Schmid-Hempel P, Schmid-Hempel R, Song SJ, Schwarz RS, vanEngelsdorp D, Dainat B.

MBio. 2016 Apr 26;7(2):e02164-15. doi: 10.1128/mBio.02164-15. Review.

10.

A universal genomic coordinate translator for comparative genomics.

Zamani N, Sundström G, Meadows JR, Höppner MP, Dainat J, Lantz H, Haas BJ, Grabherr MG.

BMC Bioinformatics. 2014 Jun 30;15:227. doi: 10.1186/1471-2105-15-227.

11.

Impact of recurrent gene duplication on adaptation of plant genomes.

Fischer I, Dainat J, Ranwez V, Glémin S, Dufayard JF, Chantret N.

BMC Plant Biol. 2014 May 31;14:151. doi: 10.1186/1471-2229-14-151.

12.

Methods to study the occurrence and the evolution of pseudogenes through a phylogenetic approach.

Dainat J, Pontarotti P.

Methods Mol Biol. 2014;1167:87-99. doi: 10.1007/978-1-4939-0835-6_7.

PMID:
24823773
13.

The chordate proteome history database.

Levasseur A, Paganini J, Dainat J, Thompson JD, Poch O, Pontarotti P, Gouret P.

Evol Bioinform Online. 2012;8:437-47. doi: 10.4137/EBO.S9186. Epub 2012 Aug 1.

14.

GLADX: an automated approach to analyze the lineage-specific loss and pseudogenization of genes.

Dainat J, Paganini J, Pontarotti P, Gouret P.

PLoS One. 2012;7(6):e38792. doi: 10.1371/journal.pone.0038792. Epub 2012 Jun 18.

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