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Items: 1 to 20 of 76

1.

Extended dynamic mode decomposition with dictionary learning: A data-driven adaptive spectral decomposition of the Koopman operator.

Li Q, Dietrich F, Bollt EM, Kevrekidis IG.

Chaos. 2017 Oct;27(10):103111. doi: 10.1063/1.4993854.

PMID:
29092410
2.

Synthesizing developmental trajectories.

Villoutreix P, Andén J, Lim B, Lu H, Kevrekidis IG, Singer A, Shvartsman SY.

PLoS Comput Biol. 2017 Sep 18;13(9):e1005742. doi: 10.1371/journal.pcbi.1005742. eCollection 2017 Sep.

3.

Reconstruction of normal forms by learning informed observation geometries from data.

Yair O, Talmon R, Coifman RR, Kevrekidis IG.

Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):E7865-E7874. doi: 10.1073/pnas.1620045114. Epub 2017 Aug 22.

PMID:
28831006
4.

Nonlinear behavior and fluctuation-induced dynamics in the photosensitive Belousov-Zhabotinsky reaction.

Voorsluijs V, Kevrekidis IG, De Decker Y.

Phys Chem Chem Phys. 2017 Aug 23;19(33):22528-22537. doi: 10.1039/c7cp03260a.

PMID:
28809962
5.

On the sighting of unicorns: A variational approach to computing invariant sets in dynamical systems.

Junge O, Kevrekidis IG.

Chaos. 2017 Jun;27(6):063102. doi: 10.1063/1.4983468.

PMID:
28679234
6.

Coarse-Grained Descriptions of Dynamics for Networks with Both Intrinsic and Structural Heterogeneities.

Bertalan T, Wu Y, Laing C, Gear CW, Kevrekidis IG.

Front Comput Neurosci. 2017 Jun 12;11:43. doi: 10.3389/fncom.2017.00043. eCollection 2017.

7.

Intrinsic map dynamics exploration for uncharted effective free-energy landscapes.

Chiavazzo E, Covino R, Coifman RR, Gear CW, Georgiou AS, Hummer G, Kevrekidis IG.

Proc Natl Acad Sci U S A. 2017 Jul 11;114(28):E5494-E5503. doi: 10.1073/pnas.1621481114. Epub 2017 Jun 20.

8.

Cell Division Induces and Switches Coherent Angular Motion within Bounded Cellular Collectives.

Siedlik MJ, Manivannan S, Kevrekidis IG, Nelson CM.

Biophys J. 2017 Jun 6;112(11):2419-2427. doi: 10.1016/j.bpj.2017.05.001.

PMID:
28591614
9.

Reconstructing ERK Signaling in the Drosophila Embryo from Fixed Images.

Lim B, Dsilva CJ, Kevrekidis IG, Shvartsman SY.

Methods Mol Biol. 2017;1487:337-351.

PMID:
27924579
10.

A classification scheme for chimera states.

Kemeth FP, Haugland SW, Schmidt L, Kevrekidis IG, Krischer K.

Chaos. 2016 Sep;26(9):094815.

PMID:
27781480
11.

Sticky Patches on Lipid Nanoparticles Enable the Selective Targeting and Killing of Untargetable Cancer Cells.

Sempkowski M, Zhu C, Menzenski MZ, Kevrekidis IG, Bruchertseifer F, Morgenstern A, Sofou S.

Langmuir. 2016 Aug 23;32(33):8329-38. doi: 10.1021/acs.langmuir.6b01464. Epub 2016 Aug 8.

PMID:
27468779
12.

Shape Transformations of Epithelial Shells.

Misra M, Audoly B, Kevrekidis IG, Shvartsman SY.

Biophys J. 2016 Apr 12;110(7):1670-8. doi: 10.1016/j.bpj.2016.03.009.

13.

Modeling epidemics on adaptively evolving networks: A data-mining perspective.

Kattis AA, Holiday A, Stoica AA, Kevrekidis IG.

Virulence. 2016;7(2):153-62. doi: 10.1080/21505594.2015.1121357. Epub 2015 Dec 22.

14.

Equation-free analysis of spike-timing-dependent plasticity.

Laing CR, Kevrekidis IG.

Biol Cybern. 2015 Dec;109(6):701-14. doi: 10.1007/s00422-015-0668-0. Epub 2015 Nov 17.

PMID:
26577337
15.

Coarse-Grained Clustering Dynamics of Heterogeneously Coupled Neurons.

Moon SJ, Cook KA, Rajendran K, Kevrekidis IG, Cisternas J, Laing CR.

J Math Neurosci. 2015 Dec;5(1):2. doi: 10.1186/2190-8567-5-2. Epub 2015 Jan 12.

16.

From discrete to continuum models of three-dimensional deformations in epithelial sheets.

Murisic N, Hakim V, Kevrekidis IG, Shvartsman SY, Audoly B.

Biophys J. 2015 Jul 7;109(1):154-63. doi: 10.1016/j.bpj.2015.05.019.

17.

Dynamics of Inductive ERK Signaling in the Drosophila Embryo.

Lim B, Dsilva CJ, Levario TJ, Lu H, Schüpbach T, Kevrekidis IG, Shvartsman SY.

Curr Biol. 2015 Jun 29;25(13):1784-90. doi: 10.1016/j.cub.2015.05.039. Epub 2015 Jun 18.

18.

Temporal ordering and registration of images in studies of developmental dynamics.

Dsilva CJ, Lim B, Lu H, Singer A, Kevrekidis IG, Shvartsman SY.

Development. 2015 May 1;142(9):1717-24. doi: 10.1242/dev.119396. Epub 2015 Apr 1.

19.

Systematic characterization of protein folding pathways using diffusion maps: application to Trp-cage miniprotein.

Kim SB, Dsilva CJ, Kevrekidis IG, Debenedetti PG.

J Chem Phys. 2015 Feb 28;142(8):085101. doi: 10.1063/1.4913322.

PMID:
25725756
20.

Diffusion maps, clustering and fuzzy Markov modeling in peptide folding transitions.

Nedialkova LV, Amat MA, Kevrekidis IG, Hummer G.

J Chem Phys. 2014 Sep 21;141(11):114102. doi: 10.1063/1.4893963.

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