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Items: 1 to 20 of 40

1.

Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models.

Yuan Q, Huang T, Li P, Hao T, Li F, Ma H, Wang Z, Zhao X, Chen T, Goryanin I.

PLoS One. 2017 Jan 13;12(1):e0169437. doi: 10.1371/journal.pone.0169437. eCollection 2017.

2.

Taxonomic and functional metagenomic analysis of anodic communities in two pilot-scale microbial fuel cells treating different industrial wastewaters.

Kiseleva L, Garushyants SK, Ma H, Simpson DJ, Fedorovich V, Cohen MF, Goryanin I.

J Integr Bioinform. 2015 Oct 6;12(3):273. doi: 10.2390/biecoll-jib-2015-273.

PMID:
26673789
3.

Magnet-Facilitated Selection of Electrogenic Bacteria from Marine Sediment.

Kiseleva L, Briliute J, Khilyas IV, Simpson DJ, Fedorovich V, Cohen M, Goryanin I.

Biomed Res Int. 2015;2015:582471. doi: 10.1155/2015/582471. Epub 2015 Oct 4.

4.

Genome Sequence of the Electrogenic Petroleum-Degrading Thalassospira sp. Strain HJ.

Kiseleva L, Garushyants SK, Briliute J, Simpson DJ, Cohen MF, Goryanin I.

Genome Announc. 2015 May 14;3(3). pii: e00483-15. doi: 10.1128/genomeA.00483-15.

5.

A semi-automated genome annotation comparison and integration scheme.

Liu Z, Ma H, Goryanin I.

BMC Bioinformatics. 2013 Jun 1;14:172. doi: 10.1186/1471-2105-14-172.

6.

A community-driven global reconstruction of human metabolism.

Thiele I, Swainston N, Fleming RM, Hoppe A, Sahoo S, Aurich MK, Haraldsdottir H, Mo ML, Rolfsson O, Stobbe MD, Thorleifsson SG, Agren R, Bölling C, Bordel S, Chavali AK, Dobson P, Dunn WB, Endler L, Hala D, Hucka M, Hull D, Jameson D, Jamshidi N, Jonsson JJ, Juty N, Keating S, Nookaew I, Le Novère N, Malys N, Mazein A, Papin JA, Price ND, Selkov E Sr, Sigurdsson MI, Simeonidis E, Sonnenschein N, Smallbone K, Sorokin A, van Beek JH, Weichart D, Goryanin I, Nielsen J, Westerhoff HV, Kell DB, Mendes P, Palsson BØ.

Nat Biotechnol. 2013 May;31(5):419-25. doi: 10.1038/nbt.2488. Epub 2013 Mar 3.

7.

SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology.

Adams R, Clark A, Yamaguchi A, Hanlon N, Tsorman N, Ali S, Lebedeva G, Goltsov A, Sorokin A, Akman OE, Troein C, Millar AJ, Goryanin I, Gilmore S.

Bioinformatics. 2013 Mar 1;29(5):664-5. doi: 10.1093/bioinformatics/btt023. Epub 2013 Jan 17.

8.

EnzML: multi-label prediction of enzyme classes using InterPro signatures.

De Ferrari L, Aitken S, van Hemert J, Goryanin I.

BMC Bioinformatics. 2012 Apr 25;13:61. doi: 10.1186/1471-2105-13-61.

9.

European Journal of Pharmaceutical Sciences. Preface.

Sorokina O, Goryanin I.

Eur J Pharm Sci. 2012 Jul 16;46(4):189. doi: 10.1016/j.ejps.2012.04.008. Epub 2012 Apr 17. No abstract available.

PMID:
22521632
10.

Systems biology: design principles of whole biological systems. Preface.

Goryachev AB, Goryanin II.

Adv Exp Med Biol. 2012;736:v-vii. No abstract available.

PMID:
22400128
11.

The reconstruction and analysis of tissue specific human metabolic networks.

Hao T, Ma HW, Zhao XM, Goryanin I.

Mol Biosyst. 2012 Feb;8(2):663-70. doi: 10.1039/c1mb05369h. Epub 2011 Dec 19.

PMID:
22183149
12.

A user-defined data type for the storage of time series data allowing efficient similarity screening.

Sorokin A, Selkov G, Goryanin I.

Eur J Pharm Sci. 2012 Jul 16;46(4):272-4. doi: 10.1016/j.ejps.2011.12.008. Epub 2011 Dec 9.

PMID:
22178292
13.

Model-based global sensitivity analysis as applied to identification of anti-cancer drug targets and biomarkers of drug resistance in the ErbB2/3 network.

Lebedeva G, Sorokin A, Faratian D, Mullen P, Goltsov A, Langdon SP, Harrison DJ, Goryanin I.

Eur J Pharm Sci. 2012 Jul 16;46(4):244-58. doi: 10.1016/j.ejps.2011.10.026. Epub 2011 Nov 9.

14.

Microarray data can predict diurnal changes of starch content in the picoalga Ostreococcus.

Sorokina O, Corellou F, Dauvillée D, Sorokin A, Goryanin I, Ball S, Bouget FY, Millar AJ.

BMC Syst Biol. 2011 Feb 26;5:36. doi: 10.1186/1752-0509-5-36.

15.

Compensatory effects in the PI3K/PTEN/AKT signaling network following receptor tyrosine kinase inhibition.

Goltsov A, Faratian D, Langdon SP, Bown J, Goryanin I, Harrison DJ.

Cell Signal. 2011 Feb;23(2):407-16. doi: 10.1016/j.cellsig.2010.10.011. Epub 2010 Oct 14.

PMID:
20951800
16.

Computational optimization and biological evolution.

Goryanin I.

Biochem Soc Trans. 2010 Oct;38(5):1206-9. doi: 10.1042/BST0381206.

PMID:
20863285
17.

DBSolve Optimum: a software package for kinetic modeling which allows dynamic visualization of simulation results.

Gizzatkulov NM, Goryanin II, Metelkin EA, Mogilevskaya EA, Peskov KV, Demin OV.

BMC Syst Biol. 2010 Aug 10;4:109. doi: 10.1186/1752-0509-4-109.

18.

Compartmentalization of the Edinburgh Human Metabolic Network.

Hao T, Ma HW, Zhao XM, Goryanin I.

BMC Bioinformatics. 2010 Jul 22;11:393. doi: 10.1186/1471-2105-11-393.

19.

In Silico Screening of Nonsteroidal Anti-Inflammatory Drugs and Their Combined Action on Prostaglandin H Synthase-1.

Goltsov A, Lebedeva G, Humphery-Smith I, Goltsov G, Demin O, Goryanin I.

Pharmaceuticals (Basel). 2010 Jul 2;3(7):2059-2081.

20.

Processivity and coupling in messenger RNA transcription.

Aitken S, Robert MC, Alexander RD, Goryanin I, Bertrand E, Beggs JD.

PLoS One. 2010 Jan 28;5(1):e8845. doi: 10.1371/journal.pone.0008845.

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