Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 20 of 31

1.

Creating a Reliable Mass Spectral-Retention Time Library for All Ion Fragmentation-Based Metabolomics.

Tada I, Tsugawa H, Meister I, Zhang P, Shu R, Katsumi R, Wheelock CE, Arita M, Chaleckis R.

Metabolites. 2019 Oct 26;9(11). pii: E251. doi: 10.3390/metabo9110251.

2.

Characterization of Lipid Profiles after Dietary Intake of Polyunsaturated Fatty Acids Using Integrated Untargeted and Targeted Lipidomics.

Naoe S, Tsugawa H, Takahashi M, Ikeda K, Arita M.

Metabolites. 2019 Oct 21;9(10). pii: E241. doi: 10.3390/metabo9100241.

3.

Mass Spectrometry Data Repository Enhances Novel Metabolite Discoveries with Advances in Computational Metabolomics.

Tsugawa H, Satoh A, Uchino H, Cajka T, Arita M, Arita M.

Metabolites. 2019 Jun 24;9(6). pii: E119. doi: 10.3390/metabo9060119.

4.

Publisher Correction: A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms.

Tsugawa H, Nakabayashi R, Mori T, Yamada Y, Takahashi M, Rai A, Sugiyama R, Yamamoto H, Nakaya T, Yamazaki M, Kooke R, Bac-Molenaar JA, Oztolan-Erol N, Keurentjes JJB, Arita M, Saito K.

Nat Methods. 2019 May;16(5):446. doi: 10.1038/s41592-019-0423-x.

PMID:
30992571
5.

A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms.

Tsugawa H, Nakabayashi R, Mori T, Yamada Y, Takahashi M, Rai A, Sugiyama R, Yamamoto H, Nakaya T, Yamazaki M, Kooke R, Bac-Molenaar JA, Oztolan-Erol N, Keurentjes JJB, Arita M, Saito K.

Nat Methods. 2019 Apr;16(4):295-298. doi: 10.1038/s41592-019-0358-2. Epub 2019 Mar 28. Erratum in: Nat Methods. 2019 Apr 16;:.

PMID:
30923379
6.

Advances in computational metabolomics and databases deepen the understanding of metabolisms.

Tsugawa H.

Curr Opin Biotechnol. 2018 Dec;54:10-17. doi: 10.1016/j.copbio.2018.01.008. Epub 2018 Feb 6. Review.

PMID:
29413746
7.

Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics.

Lai Z, Tsugawa H, Wohlgemuth G, Mehta S, Mueller M, Zheng Y, Ogiwara A, Meissen J, Showalter M, Takeuchi K, Kind T, Beal P, Arita M, Fiehn O.

Nat Methods. 2018 Jan;15(1):53-56. doi: 10.1038/nmeth.4512. Epub 2017 Nov 27.

8.

Critical Assessment of Small Molecule Identification 2016: automated methods.

Schymanski EL, Ruttkies C, Krauss M, Brouard C, Kind T, Dührkop K, Allen F, Vaniya A, Verdegem D, Böcker S, Rousu J, Shen H, Tsugawa H, Sajed T, Fiehn O, Ghesquière B, Neumann S.

J Cheminform. 2017 Mar 27;9(1):22. doi: 10.1186/s13321-017-0207-1.

9.

Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy.

Blaženović I, Kind T, Torbašinović H, Obrenović S, Mehta SS, Tsugawa H, Wermuth T, Schauer N, Jahn M, Biedendieck R, Jahn D, Fiehn O.

J Cheminform. 2017 May 25;9(1):32. doi: 10.1186/s13321-017-0219-x.

10.

Using MS-FINDER for identifying 19 natural products in the CASMI 2016 contest.

Vaniya A, Samra SN, Palazoglu M, Tsugawa H, Fiehn O.

Phytochem Lett. 2017 Sep;21:306-312. doi: 10.1016/j.phytol.2016.12.008. Epub 2016 Dec 9.

11.

Integrated Strategy for Unknown EI-MS Identification Using Quality Control Calibration Curve, Multivariate Analysis, EI-MS Spectral Database, and Retention Index Prediction.

Matsuo T, Tsugawa H, Miyagawa H, Fukusaki E.

Anal Chem. 2017 Jun 20;89(12):6766-6773. doi: 10.1021/acs.analchem.7b01010. Epub 2017 May 26.

PMID:
28520403
12.

The importance of bioinformatics for connecting data-driven lipidomics and biological insights.

Tsugawa H, Ikeda K, Arita M.

Biochim Biophys Acta Mol Cell Biol Lipids. 2017 Aug;1862(8):762-765. doi: 10.1016/j.bbalip.2017.05.006. Epub 2017 May 14. Review. No abstract available.

PMID:
28514647
13.

Identification of small molecules using accurate mass MS/MS search.

Kind T, Tsugawa H, Cajka T, Ma Y, Lai Z, Mehta SS, Wohlgemuth G, Barupal DK, Showalter MR, Arita M, Fiehn O.

Mass Spectrom Rev. 2018 Jul;37(4):513-532. doi: 10.1002/mas.21535. Epub 2017 Apr 24. Review.

PMID:
28436590
14.

Comprehensive identification of sphingolipid species by in silico retention time and tandem mass spectral library.

Tsugawa H, Ikeda K, Tanaka W, Senoo Y, Arita M, Arita M.

J Cheminform. 2017 Mar 15;9:19. doi: 10.1186/s13321-017-0205-3. eCollection 2017.

15.

Flavor characteristics of the juices from fresh market tomatoes differentiated from those from processing tomatoes by combined analysis of volatile profiles with sensory evaluation.

Iijima Y, Iwasaki Y, Otagiri Y, Tsugawa H, Sato T, Otomo H, Sekine Y, Obata A.

Biosci Biotechnol Biochem. 2016 Dec;80(12):2401-2411. Epub 2016 Aug 30.

PMID:
27573376
16.

Discovering Regulated Metabolite Families in Untargeted Metabolomics Studies.

Treutler H, Tsugawa H, Porzel A, Gorzolka K, Tissier A, Neumann S, Balcke GU.

Anal Chem. 2016 Aug 16;88(16):8082-90. doi: 10.1021/acs.analchem.6b01569. Epub 2016 Aug 2.

PMID:
27452369
17.

Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software.

Tsugawa H, Kind T, Nakabayashi R, Yukihira D, Tanaka W, Cajka T, Saito K, Fiehn O, Arita M.

Anal Chem. 2016 Aug 16;88(16):7946-58. doi: 10.1021/acs.analchem.6b00770. Epub 2016 Aug 4.

PMID:
27419259
18.

Boosting Sensitivity in Liquid Chromatography-Fourier Transform Ion Cyclotron Resonance-Tandem Mass Spectrometry for Product Ion Analysis of Monoterpene Indole Alkaloids.

Nakabayashi R, Tsugawa H, Kitajima M, Takayama H, Saito K.

Front Plant Sci. 2015 Dec 17;6:1127. doi: 10.3389/fpls.2015.01127. eCollection 2015.

19.

MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis.

Tsugawa H, Cajka T, Kind T, Ma Y, Higgins B, Ikeda K, Kanazawa M, VanderGheynst J, Fiehn O, Arita M.

Nat Methods. 2015 Jun;12(6):523-6. doi: 10.1038/nmeth.3393. Epub 2015 May 4.

20.

MRM-DIFF: data processing strategy for differential analysis in large scale MRM-based lipidomics studies.

Tsugawa H, Ohta E, Izumi Y, Ogiwara A, Yukihira D, Bamba T, Fukusaki E, Arita M.

Front Genet. 2015 Jan 30;5:471. doi: 10.3389/fgene.2014.00471. eCollection 2014.

Supplemental Content

Loading ...
Support Center