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Items: 14

1.

Assembly and Analysis of the Genome Sequence of the Yeast Brettanomyces naardenensis CBS 7540.

Tiukova IA, Jiang H, Dainat J, Hoeppner MP, Lantz H, Piskur J, Sandgren M, Nielsen J, Gu Z, Passoth V.

Microorganisms. 2019 Oct 26;7(11). pii: E489. doi: 10.3390/microorganisms7110489.

2.

Chromosomal genome assembly of the ethanol production strain CBS 11270 indicates a highly dynamic genome structure in the yeast species Brettanomyces bruxellensis.

Tiukova IA, Pettersson ME, Hoeppner MP, Olsen RA, Käller M, Nielsen J, Dainat J, Lantz H, Söderberg J, Passoth V.

PLoS One. 2019 May 1;14(5):e0215077. doi: 10.1371/journal.pone.0215077. eCollection 2019.

3.

Metatranscriptomes Reveal That All Three Domains of Life Are Active but Are Dominated by Bacteria in the Fennoscandian Crystalline Granitic Continental Deep Biosphere.

Lopez-Fernandez M, Simone D, Wu X, Soler L, Nilsson E, Holmfeldt K, Lantz H, Bertilsson S, Dopson M.

MBio. 2018 Nov 20;9(6). pii: e01792-18. doi: 10.1128/mBio.01792-18.

4.

Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen.

Lin YC, Wang J, Delhomme N, Schiffthaler B, Sundström G, Zuccolo A, Nystedt B, Hvidsten TR, de la Torre A, Cossu RM, Hoeppner MP, Lantz H, Scofield DG, Zamani N, Johansson A, Mannapperuma C, Robinson KM, Mähler N, Leitch IJ, Pellicer J, Park EJ, Van Montagu M, Van de Peer Y, Grabherr M, Jansson S, Ingvarsson PK, Street NR.

Proc Natl Acad Sci U S A. 2018 Nov 13;115(46):E10970-E10978. doi: 10.1073/pnas.1801437115. Epub 2018 Oct 29.

5.

Ten steps to get started in Genome Assembly and Annotation.

Dominguez Del Angel V, Hjerde E, Sterck L, Capella-Gutierrez S, Notredame C, Vinnere Pettersson O, Amselem J, Bouri L, Bocs S, Klopp C, Gibrat JF, Vlasova A, Leskosek BL, Soler L, Binzer-Panchal M, Lantz H.

F1000Res. 2018 Feb 5;7. pii: ELIXIR-148. doi: 10.12688/f1000research.13598.1. eCollection 2018.

6.

A practical guide to build de-novo assemblies for single tissues of non-model organisms: the example of a Neotropical frog.

Montero-Mendieta S, Grabherr M, Lantz H, De la Riva I, Leonard JA, Webster MT, Vilà C.

PeerJ. 2017 Sep 1;5:e3702. doi: 10.7717/peerj.3702. eCollection 2017.

7.

Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies).

Delhomme N, Sundström G, Zamani N, Lantz H, Lin YC, Hvidsten TR, Höppner MP, Jern P, Van de Peer Y, Lundeberg J, Grabherr MG, Street NR.

PLoS One. 2015 Sep 28;10(9):e0139080. doi: 10.1371/journal.pone.0139080. eCollection 2015.

8.

Quantitative proteogenomics of human pathogens using DIA-MS.

Malmström L, Bakochi A, Svensson G, Kilsgård O, Lantz H, Petersson AC, Hauri S, Karlsson C, Malmström J.

J Proteomics. 2015 Nov 3;129:98-107. doi: 10.1016/j.jprot.2015.09.012. Epub 2015 Sep 14.

PMID:
26381203
9.

Genome and physiology of the ascomycete filamentous fungus Xeromyces bisporus, the most xerophilic organism isolated to date.

Leong SL, Lantz H, Pettersson OV, Frisvad JC, Thrane U, Heipieper HJ, Dijksterhuis J, Grabherr M, Pettersson M, Tellgren-Roth C, Schnürer J.

Environ Microbiol. 2015 Feb;17(2):496-513. doi: 10.1111/1462-2920.12596. Epub 2014 Oct 7.

PMID:
25142400
10.

A universal genomic coordinate translator for comparative genomics.

Zamani N, Sundström G, Meadows JR, Höppner MP, Dainat J, Lantz H, Haas BJ, Grabherr MG.

BMC Bioinformatics. 2014 Jun 30;15:227. doi: 10.1186/1471-2105-15-227.

11.

Xerochrysium gen. nov. and Bettsia, genera encompassing xerophilic species of Chrysosporium.

Pitt JI, Lantz H, Pettersson OV, Leong SL.

IMA Fungus. 2013 Dec;4(2):229-41. doi: 10.5598/imafungus.2013.04.02.08. Epub 2013 Nov 19.

12.

Unsupervised genome-wide recognition of local relationship patterns.

Zamani N, Russell P, Lantz H, Hoeppner MP, Meadows JR, Vijay N, Mauceli E, di Palma F, Lindblad-Toh K, Jern P, Grabherr MG.

BMC Genomics. 2013 May 24;14:347. doi: 10.1186/1471-2164-14-347.

13.

Phylogeny and intraspecific variation of the extreme xerophile, Xeromyces bisporus.

Pettersson OV, Leong SL, Lantz H, Rice T, Dijksterhuis J, Houbraken J, Samson RA, Schnürer J.

Fungal Biol. 2011 Nov;115(11):1100-11. doi: 10.1016/j.funbio.2011.06.012. Epub 2011 Jul 22.

PMID:
22036289
14.

Re-assessment of monophyly, evolution of myrmecophytism, and rapid radiation in Neonauclea s.s. (Rubiaceae).

Razafimandimbison SG, Moog J, Lantz H, Maschwitz U, Bremer B.

Mol Phylogenet Evol. 2005 Feb;34(2):334-54. Epub 2004 Dec 9. Erratum in: Mol Phylogenet Evol. 2005 Dec;37(3):938-9.

PMID:
15619446

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