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Items: 1 to 20 of 103

1.

Escherichia coli Sequence Type 410 Is Causing New International High-Risk Clones.

Roer L, Overballe-Petersen S, Hansen F, Schønning K, Wang M, Røder BL, Hansen DS, Justesen US, Andersen LP, Fulgsang-Damgaard D, Hopkins KL, Woodford N, Falgenhauer L, Chakraborty T, Samuelsen Ø, Sjöström K, Johannesen TB, Ng K, Nielsen J, Ethelberg S, Stegger M, Hammerum AM, Hasman H.

mSphere. 2018 Jul 18;3(4). pii: e00337-18. doi: 10.1128/mSphere.00337-18.

2.

Recommendations To Address the Difficulties Encountered When Determining Linezolid Resistance from Whole-Genome Sequencing Data.

Beukers AG, Hasman H, Hegstad K, van Hal SJ.

Antimicrob Agents Chemother. 2018 Jul 27;62(8). pii: e00613-18. doi: 10.1128/AAC.00613-18. Print 2018 Aug.

PMID:
29844046
3.

Vancomycin resistance in Enterococcus faecium isolated from Danish chicken meat is located on a pVEF4-like plasmid persisting in poultry for 18 years.

Leinweber H, Alotaibi SMI, Overballe-Petersen S, Hansen F, Hasman H, Bortolaia V, Hammerum AM, Ingmer H.

Int J Antimicrob Agents. 2018 Aug;52(2):283-286. doi: 10.1016/j.ijantimicag.2018.03.019. Epub 2018 Apr 3.

PMID:
29621590
4.

SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data.

Kaya H, Hasman H, Larsen J, Stegger M, Johannesen TB, Allesøe RL, Lemvigh CK, Aarestrup FM, Lund O, Larsen AR.

mSphere. 2018 Feb 14;3(1). pii: e00612-17. doi: 10.1128/mSphere.00612-17. eCollection 2018 Jan-Feb.

5.

Complete Nucleotide Sequence of an Escherichia coli Sequence Type 410 Strain Carrying blaNDM-5 on an IncF Multidrug Resistance Plasmid and blaOXA-181 on an IncX3 Plasmid.

Overballe-Petersen S, Roer L, Ng K, Hansen F, Justesen US, Andersen LP, Stegger M, Hammerum AM, Hasman H.

Genome Announc. 2018 Feb 1;6(5). pii: e01542-17. doi: 10.1128/genomeA.01542-17.

6.

CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli Based on the fumC and fimH Alleles.

Roer L, Johannesen TB, Hansen F, Stegger M, Tchesnokova V, Sokurenko E, Garibay N, Allesøe R, Thomsen MCF, Lund O, Hasman H, Hammerum AM.

J Clin Microbiol. 2018 Mar 26;56(4). pii: e00063-18. doi: 10.1128/JCM.00063-18. Print 2018 Apr. No abstract available.

7.

Use of a Regression Model to Study Host-Genomic Determinants of Phage Susceptibility in MRSA.

Zschach H, Larsen MV, Hasman H, Westh H, Nielsen M, Międzybrodzki R, Jończyk-Matysiak E, Weber-Dąbrowska B, Górski A.

Antibiotics (Basel). 2018 Jan 29;7(1). pii: E9. doi: 10.3390/antibiotics7010009.

8.

Molecular Methods for Detection of Antimicrobial Resistance.

Anjum MF, Zankari E, Hasman H.

Microbiol Spectr. 2017 Dec;5(6). doi: 10.1128/microbiolspec.ARBA-0011-2017. Review.

PMID:
29219107
9.

Dissemination and Characteristics of a Novel Plasmid-Encoded Carbapenem-Hydrolyzing Class D β-Lactamase, OXA-436, Found in Isolates from Four Patients at Six Different Hospitals in Denmark.

Samuelsen Ø, Hansen F, Aasnæs B, Hasman H, Lund BA, Leiros HS, Lilje B, Janice J, Jakobsen L, Littauer P, Søes LM, Holzknecht BJ, Andersen LP, Stegger M, Andersen PS, Hammerum AM.

Antimicrob Agents Chemother. 2017 Dec 21;62(1). pii: e01260-17. doi: 10.1128/AAC.01260-17. Print 2018 Jan.

10.

RUCS: rapid identification of PCR primers for unique core sequences.

Thomsen MCF, Hasman H, Westh H, Kaya H, Lund O.

Bioinformatics. 2017 Dec 15;33(24):3917-3921. doi: 10.1093/bioinformatics/btx526.

11.

Novel mcr-3 variant, encoding mobile colistin resistance, in an ST131 Escherichia coli isolate from bloodstream infection, Denmark, 2014.

Roer L, Hansen F, Stegger M, Sönksen UW, Hasman H, Hammerum AM.

Euro Surveill. 2017 Aug 3;22(31). doi: 22846.

12.

Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles.

Roer L, Tchesnokova V, Allesøe R, Muradova M, Chattopadhyay S, Ahrenfeldt J, Thomsen MCF, Lund O, Hansen F, Hammerum AM, Sokurenko E, Hasman H.

J Clin Microbiol. 2017 Aug;55(8):2538-2543. doi: 10.1128/JCM.00737-17. Epub 2017 Jun 7.

13.

Detection of the optrA gene in a clinical ST16 Enterococcus faecalis isolate in Denmark.

Vorobieva V, Roer L, Justesen US, Hansen F, Frimodt-Møller N, Hasman H, Hammerum AM.

J Glob Antimicrob Resist. 2017 Sep;10:12-13. doi: 10.1016/j.jgar.2017.05.002. Epub 2017 May 30. No abstract available.

PMID:
28572038
14.

Emergence of vanA Enterococcus faecium in Denmark, 2005-15.

Hammerum AM, Baig S, Kamel Y, Roer L, Pinholt M, Gumpert H, Holzknecht B, Røder B, Justesen US, Samulioniené J, Kjærsgaard M, Østergaard C, Holm A, Dzajic E, Søndergaard TS, Gaini S, Edquist P, Alm E, Lilje B, Westh H, Stegger M, Hasman H.

J Antimicrob Chemother. 2017 Aug 1;72(8):2184-2190. doi: 10.1093/jac/dkx138.

PMID:
28541565
15.

Turn Up the Heat-Food and Clinical Escherichia coli Isolates Feature Two Transferrable Loci of Heat Resistance.

Boll EJ, Marti R, Hasman H, Overballe-Petersen S, Stegger M, Ng K, Knøchel S, Krogfelt KA, Hummerjohann J, Struve C.

Front Microbiol. 2017 Apr 7;8:579. doi: 10.3389/fmicb.2017.00579. eCollection 2017.

16.

WGS-based surveillance of third-generation cephalosporin-resistant Escherichia coli from bloodstream infections in Denmark.

Roer L, Hansen F, Thomsen MCF, Knudsen JD, Hansen DS, Wang M, Samulioniené J, Justesen US, Røder BL, Schumacher H, Østergaard C, Andersen LP, Dzajic E, Søndergaard TS, Stegger M, Hammerum AM, Hasman H.

J Antimicrob Chemother. 2017 Jul 1;72(7):1922-1929. doi: 10.1093/jac/dkx092.

PMID:
28369408
17.

Detection of mcr-1-encoding plasmid-mediated colistin-resistant Salmonella isolates from human infection in Denmark.

Torpdahl M, Hasman H, Litrup E, Skov RL, Nielsen EM, Hammerum AM.

Int J Antimicrob Agents. 2017 Feb;49(2):261-262. doi: 10.1016/j.ijantimicag.2016.11.010. Epub 2017 Jan 3. No abstract available.

PMID:
28081925
18.

Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.

Ahrenfeldt J, Skaarup C, Hasman H, Pedersen AG, Aarestrup FM, Lund O.

BMC Genomics. 2017 Jan 5;18(1):19. doi: 10.1186/s12864-016-3407-6.

19.

First report of metronidazole resistant, nimD-positive, Bacteroides stercoris isolated from an abdominal abscess in a 70-year-old woman.

Otte E, Nielsen HL, Hasman H, Fuglsang-Damgaard D.

Anaerobe. 2017 Feb;43:91-93. doi: 10.1016/j.anaerobe.2016.12.010. Epub 2016 Dec 21.

PMID:
28011371
20.

[Epidemic increase in the incidence of carbapenemase-producing Enterobacteriaceae in Denmark].

Wang M, Ellermann-Eriksen S, Hansen DS, Kjerulf A, Fuglsang-Damgaard D, Holm A, Østergaard C, Røder B, Sönksen UW, Detlefsen M, Hansen F, Hasman H, Hammerum A, Skov RL.

Ugeskr Laeger. 2016 Nov 7;178(45). pii: V06160422. Danish.

PMID:
27855770

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