Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 20 of 55

1.

Author Correction: Rapid de novo assembly of the European eel genome from nanopore sequencing reads.

Jansen HJ, Liem M, Jong-Raadsen SA, Dufour S, Weltzien FA, Swinkels W, Koelewijn A, Palstra AP, Pelster B, Spaink HP, van den Thillart GE, Dirks RP, Henkel CV.

Sci Rep. 2019 May 22;9(1):7911. doi: 10.1038/s41598-019-44275-3.

2.

RNAseq Profiling of Leukocyte Populations in Zebrafish Larvae Reveals a cxcl11 Chemokine Gene as a Marker of Macrophage Polarization During Mycobacterial Infection.

Rougeot J, Torraca V, Zakrzewska A, Kanwal Z, Jansen HJ, Sommer F, Spaink HP, Meijer AH.

Front Immunol. 2019 Apr 17;10:832. doi: 10.3389/fimmu.2019.00832. eCollection 2019.

3.

Deep transcriptome analysis of the heat shock response in an Atlantic sturgeon (Acipenser oxyrinchus) cell line.

Yebra-Pimentel ES, Gebert M, Jansen HJ, Jong-Raadsen SA, Dirks RPH.

Fish Shellfish Immunol. 2019 May;88:508-517. doi: 10.1016/j.fsi.2019.03.014. Epub 2019 Mar 9.

PMID:
30862517
4.

MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry.

Jain M, Tyson JR, Loose M, Ip CLC, Eccles DA, O'Grady J, Malla S, Leggett RM, Wallerman O, Jansen HJ, Zalunin V, Birney E, Brown BL, Snutch TP, Olsen HE; MinION Analysis and Reference Consortium.

F1000Res. 2017 May 31;6:760. doi: 10.12688/f1000research.11354.1. eCollection 2017.

5.

Rapid de novo assembly of the European eel genome from nanopore sequencing reads.

Jansen HJ, Liem M, Jong-Raadsen SA, Dufour S, Weltzien FA, Swinkels W, Koelewijn A, Palstra AP, Pelster B, Spaink HP, Thillart GEVD, Dirks RP, Henkel CV.

Sci Rep. 2017 Aug 3;7(1):7213. doi: 10.1038/s41598-017-07650-6. Erratum in: Sci Rep. 2019 May 22;9(1):7911.

6.

De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing.

Liem M, Jansen HJ, Dirks RP, Henkel CV, van Heusden GPH, Lemmers RJLF, Omer T, Shao S, Punt PJ, Spaink HP.

Version 2. F1000Res. 2017 May 3 [revised 2018 Jan 1];6:618. doi: 10.12688/f1000research.11146.2. eCollection 2017.

7.

MinION Analysis and Reference Consortium: Phase 1 data release and analysis.

Ip CLC, Loose M, Tyson JR, de Cesare M, Brown BL, Jain M, Leggett RM, Eccles DA, Zalunin V, Urban JM, Piazza P, Bowden RJ, Paten B, Mwaigwisya S, Batty EM, Simpson JT, Snutch TP, Birney E, Buck D, Goodwin S, Jansen HJ, O'Grady J, Olsen HE; MinION Analysis and Reference Consortium.

F1000Res. 2015 Oct 15;4:1075. doi: 10.12688/f1000research.7201.1. eCollection 2015.

8.

Genotype-phenotype modeling considering intermediate level of biological variation: a case study involving sensory traits, metabolites and QTLs in ripe tomatoes.

Wang H, Paulo J, Kruijer W, Boer M, Jansen H, Tikunov Y, Usadel B, van Heusden S, Bovy A, van Eeuwijk F.

Mol Biosyst. 2015 Nov;11(11):3101-10. doi: 10.1039/c5mb00477b. Epub 2015 Sep 7.

PMID:
26344654
9.

Changes in ovarian gene expression profiles and plasma hormone levels in maturing European eel (Anguilla anguilla); Biomarkers for broodstock selection.

Burgerhout E, Minegishi Y, Brittijn SA, de Wijze DL, Henkel CV, Jansen HJ, Spaink HP, Dirks RP, van den Thillart GEEJM.

Gen Comp Endocrinol. 2016 Jan 1;225:185-196. doi: 10.1016/j.ygcen.2015.08.006. Epub 2015 Aug 6.

PMID:
26255685
10.

A disruptive sequencer meets disruptive publishing.

Loman N, Goodwin S, Jansen H, Loose M.

F1000Res. 2015 Oct 15;4:1074. doi: 10.12688/f1000research.7229.1. eCollection 2015.

11.

Testing tuberculosis drug efficacy in a zebrafish high-throughput translational medicine screen.

Ordas A, Raterink RJ, Cunningham F, Jansen HJ, Wiweger MI, Jong-Raadsen S, Bos S, Bates RH, Barros D, Meijer AH, Vreeken RJ, Ballell-Pages L, Dirks RP, Hankemeier T, Spaink HP.

Antimicrob Agents Chemother. 2015 Feb;59(2):753-62. doi: 10.1128/AAC.03588-14. Epub 2014 Nov 10.

12.

RNA sequencing of FACS-sorted immune cell populations from zebrafish infection models to identify cell specific responses to intracellular pathogens.

Rougeot J, Zakrzewska A, Kanwal Z, Jansen HJ, Spaink HP, Meijer AH.

Methods Mol Biol. 2014;1197:261-74. doi: 10.1007/978-1-4939-1261-2_15.

PMID:
25172286
13.

The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system.

Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wüster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pla D, Sanz L, Hyder AS, Ribeiro JM, Arntzen JW, van den Thillart GE, Boetzer M, Pirovano W, Dirks RP, Spaink HP, Duboule D, McGlinn E, Kini RM, Richardson MK.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20651-6. doi: 10.1073/pnas.1314702110. Epub 2013 Dec 2.

14.

Advances in genomics of bony fish.

Spaink HP, Jansen HJ, Dirks RP.

Brief Funct Genomics. 2014 Mar;13(2):144-56. doi: 10.1093/bfgp/elt046. Epub 2013 Nov 29. Review.

15.

Robotic injection of zebrafish embryos for high-throughput screening in disease models.

Spaink HP, Cui C, Wiweger MI, Jansen HJ, Veneman WJ, Marín-Juez R, de Sonneville J, Ordas A, Torraca V, van der Ent W, Leenders WP, Meijer AH, Snaar-Jagalska BE, Dirks RP.

Methods. 2013 Aug 15;62(3):246-54. doi: 10.1016/j.ymeth.2013.06.002. Epub 2013 Jun 11.

16.

Deep RNA sequencing of the skeletal muscle transcriptome in swimming fish.

Palstra AP, Beltran S, Burgerhout E, Brittijn SA, Magnoni LJ, Henkel CV, Jansen HJ, van den Thillart GE, Spaink HP, Planas JV.

PLoS One. 2013;8(1):e53171. doi: 10.1371/journal.pone.0053171. Epub 2013 Jan 8.

17.

Identification of novel bacterial M.SssI DNA methyltransferase inhibitors.

Hupkes M, Azevedo R, Jansen H, van Zoelen EJ, Dechering KJ.

J Biomol Screen. 2013 Mar;18(3):348-55. doi: 10.1177/1087057112465009. Epub 2012 Oct 25.

PMID:
23103529
18.

First draft genome sequence of the Japanese eel, Anguilla japonica.

Henkel CV, Dirks RP, de Wijze DL, Minegishi Y, Aoyama J, Jansen HJ, Turner B, Knudsen B, Bundgaard M, Hvam KL, Boetzer M, Pirovano W, Weltzien FA, Dufour S, Tsukamoto K, Spaink HP, van den Thillart GE.

Gene. 2012 Dec 15;511(2):195-201. doi: 10.1016/j.gene.2012.09.064. Epub 2012 Sep 29.

19.

Comparison of the exomes of common carp (Cyprinus carpio) and zebrafish (Danio rerio).

Henkel CV, Dirks RP, Jansen HJ, Forlenza M, Wiegertjes GF, Howe K, van den Thillart GE, Spaink HP.

Zebrafish. 2012 Jun;9(2):59-67. doi: 10.1089/zeb.2012.0773.

20.

Primitive duplicate Hox clusters in the European eel's genome.

Henkel CV, Burgerhout E, de Wijze DL, Dirks RP, Minegishi Y, Jansen HJ, Spaink HP, Dufour S, Weltzien FA, Tsukamoto K, van den Thillart GE.

PLoS One. 2012;7(2):e32231. doi: 10.1371/journal.pone.0032231. Epub 2012 Feb 24.

Supplemental Content

Loading ...
Support Center