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Items: 1 to 20 of 62

1.

Comparative analysis of repetitive sequences among species from the potato and the tomato clades.

Gaiero P, Vaio M, Peters SA, Schranz ME, de Jong H, Speranza PR.

Ann Bot. 2019 Feb 15;123(3):521-532. doi: 10.1093/aob/mcy186.

PMID:
30346473
2.

Intact DNA purified from flow-sorted nuclei unlocks the potential of next-generation genome mapping and assembly in Solanum species.

Gaiero P, Šimková H, Vrána J, Santiñaque FF, López-Carro B, Folle GA, van de Belt J, Peters SA, Doležel J, de Jong H.

MethodsX. 2018 Apr 10;5:328-336. doi: 10.1016/j.mex.2018.03.009. eCollection 2018.

3.

Optimization of Cell Spreading and Image Quality for the Study of Chromosomes in Plant Tissues.

Kantama L, Wijnker E, de Jong H.

Methods Mol Biol. 2017;1669:141-158. doi: 10.1007/978-1-4939-7286-9_12.

PMID:
28936656
4.

Genetic Dissection of Morphometric Traits Reveals That Phytochrome B Affects Nucleus Size and Heterochromatin Organization in Arabidopsis thaliana.

Snoek BL, Pavlova P, Tessadori F, Peeters AJM, Bourbousse C, Barneche F, de Jong H, Fransz PF, van Zanten M.

G3 (Bethesda). 2017 Aug 7;7(8):2519-2531. doi: 10.1534/g3.117.043539.

5.

Collinearity between potato (Solanum tuberosum L.) and wild relatives assessed by comparative cytogenetic mapping.

Gaiero P, van de Belt J, Vilaró F, Schranz ME, Speranza P, de Jong H.

Genome. 2017 Mar;60(3):228-240. doi: 10.1139/gen-2016-0150. Epub 2016 Nov 14.

PMID:
28169563
6.

Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana.

Fransz P, Linc G, Lee CR, Aflitos SA, Lasky JR, Toomajian C, Ali H, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, Martienssen R, Koornneef M, Nordborg M, Juenger TE, de Jong H, Schranz ME.

Plant J. 2016 Oct;88(2):159-178. doi: 10.1111/tpj.13262. Epub 2016 Sep 13.

7.

Detection of High-grade Prostate Cancer Using a Urinary Molecular Biomarker-Based Risk Score.

Van Neste L, Hendriks RJ, Dijkstra S, Trooskens G, Cornel EB, Jannink SA, de Jong H, Hessels D, Smit FP, Melchers WJ, Leyten GH, de Reijke TM, Vergunst H, Kil P, Knipscheer BC, Hulsbergen-van de Kaa CA, Mulders PF, van Oort IM, Van Criekinge W, Schalken JA.

Eur Urol. 2016 Nov;70(5):740-748. doi: 10.1016/j.eururo.2016.04.012. Epub 2016 Apr 20.

PMID:
27108162
8.

Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS data.

Aflitos SA, Severing E, Sanchez-Perez G, Peters S, de Jong H, de Ridder D.

BMC Bioinformatics. 2015 Nov 2;16:352. doi: 10.1186/s12859-015-0806-7.

9.

Homologues of potato chromosome 5 show variable collinearity in the euchromatin, but dramatic absence of sequence similarity in the pericentromeric heterochromatin.

de Boer JM, Datema E, Tang X, Borm TJ, Bakker EH, van Eck HJ, van Ham RC, de Jong H, Visser RG, Bachem CW.

BMC Genomics. 2015 May 10;16:374. doi: 10.1186/s12864-015-1578-1.

10.

Karyotype evolution in apomictic Boechera and the origin of the aberrant chromosomes.

Mandáková T, Schranz ME, Sharbel TF, de Jong H, Lysak MA.

Plant J. 2015 Jun;82(5):785-93. doi: 10.1111/tpj.12849. Erratum in: Plant J. 2017 Apr;90(1):217.

11.

Identification of a Candidate Gene Panel for the Early Diagnosis of Prostate Cancer.

Leyten GH, Hessels D, Smit FP, Jannink SA, de Jong H, Melchers WJ, Cornel EB, de Reijke TM, Vergunst H, Kil P, Knipscheer BC, Hulsbergen-van de Kaa CA, Mulders PF, van Oort IM, Schalken JA.

Clin Cancer Res. 2015 Jul 1;21(13):3061-70. doi: 10.1158/1078-0432.CCR-14-3334. Epub 2015 Mar 18.

12.

Fluorescent in situ hybridization shows DIPLOSPOROUS located on one of the NOR chromosomes in apomictic dandelions (Taraxacum) in the absence of a large hemizygous chromosomal region.

Vašut RJ, Vijverberg K, van Dijk PJ, de Jong H.

Genome. 2014 Nov;57(11-12):609-20. doi: 10.1139/gen-2014-0143. Epub 2015 Feb 9.

PMID:
25760668
13.

Introgression browser: high-throughput whole-genome SNP visualization.

Aflitos SA, Sanchez-Perez G, de Ridder D, Fransz P, Schranz ME, de Jong H, Peters SA.

Plant J. 2015 Apr;82(1):174-82. doi: 10.1111/tpj.12800.

14.

DELAY OF GERMINATION 1 mediates a conserved coat-dormancy mechanism for the temperature- and gibberellin-dependent control of seed germination.

Graeber K, Linkies A, Steinbrecher T, Mummenhoff K, Tarkowská D, Turečková V, Ignatz M, Sperber K, Voegele A, de Jong H, Urbanová T, Strnad M, Leubner-Metzger G.

Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):E3571-80. doi: 10.1073/pnas.1403851111. Epub 2014 Aug 11.

15.

Chromosomal organizations of major repeat families on potato (Solanum tuberosum) and further exploring in its sequenced genome.

Tang X, Datema E, Guzman MO, de Boer JM, van Eck HJ, Bachem CW, Visser RG, de Jong H.

Mol Genet Genomics. 2014 Dec;289(6):1307-19. doi: 10.1007/s00438-014-0891-8. Epub 2014 Aug 9.

PMID:
25106953
16.

Fine mapping of the tomato yellow leaf curl virus resistance gene Ty-2 on chromosome 11 of tomato.

Yang X, Caro M, Hutton SF, Scott JW, Guo Y, Wang X, Rashid MH, Szinay D, de Jong H, Visser RG, Bai Y, Du Y.

Mol Breed. 2014;34:749-760. Epub 2014 Mar 28.

17.

KLK3, PCA3, and TMPRSS2-ERG expression in the peripheral blood mononuclear cell fraction from castration-resistant prostate cancer patients and response to docetaxel treatment.

Dijkstra S, Leyten GH, Jannink SA, de Jong H, Mulders PF, van Oort IM, Schalken JA.

Prostate. 2014 Sep;74(12):1222-30. doi: 10.1002/pros.22839. Epub 2014 Jul 7.

PMID:
25043536
18.

Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing.

100 Tomato Genome Sequencing Consortium, Aflitos S, Schijlen E, de Jong H, de Ridder D, Smit S, Finkers R, Wang J, Zhang G, Li N, Mao L, Bakker F, Dirks R, Breit T, Gravendeel B, Huits H, Struss D, Swanson-Wagner R, van Leeuwen H, van Ham RC, Fito L, Guignier L, Sevilla M, Ellul P, Ganko E, Kapur A, Reclus E, de Geus B, van de Geest H, Te Lintel Hekkert B, van Haarst J, Smits L, Koops A, Sanchez-Perez G, van Heusden AW, Visser R, Quan Z, Min J, Liao L, Wang X, Wang G, Yue Z, Yang X, Xu N, Schranz E, Smets E, Vos R, Rauwerda J, Ursem R, Schuit C, Kerns M, van den Berg J, Vriezen W, Janssen A, Datema E, Jahrman T, Moquet F, Bonnet J, Peters S.

Plant J. 2014 Oct;80(1):136-48. doi: 10.1111/tpj.12616. Epub 2014 Sep 3.

19.

Fluorescence in situ hybridization and optical mapping to correct scaffold arrangement in the tomato genome.

Shearer LA, Anderson LK, de Jong H, Smit S, Goicoechea JL, Roe BA, Hua A, Giovannoni JJ, Stack SM.

G3 (Bethesda). 2014 May 30;4(8):1395-405. doi: 10.1534/g3.114.011197.

20.

Hybrid recreation by reverse breeding in Arabidopsis thaliana.

Wijnker E, Deurhof L, van de Belt J, de Snoo CB, Blankestijn H, Becker F, Ravi M, Chan SW, van Dun K, Lelivelt CL, de Jong H, Dirks R, Keurentjes JJ.

Nat Protoc. 2014 Apr;9(4):761-72. doi: 10.1038/nprot.2014.049. Epub 2014 Mar 6.

PMID:
24603935

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