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Items: 1 to 20 of 24

1.

Impact of Small Molecules on Intermolecular G-Quadruplex Formation.

Gyawali P, Gc K, Ma Y, Abeysirigunawardena S, Nagasawa K, Balci H.

Molecules. 2019 Apr 20;24(8). pii: E1570. doi: 10.3390/molecules24081570.

2.

A force sensor that converts fluorescence signal into force measurement utilizing short looped DNA.

Mustafa G, Chuang CY, Roy WA, Farhath MM, Pokhrel N, Ma Y, Nagasawa K, Antony E, Comstock MJ, Basu S, Balci H.

Biosens Bioelectron. 2018 Dec 15;121:34-40. doi: 10.1016/j.bios.2018.08.073. Epub 2018 Aug 31.

PMID:
30195120
3.

A practical guide to studying G-quadruplex structures using single-molecule FRET.

Maleki P, Budhathoki JB, Roy WA, Balci H.

Mol Genet Genomics. 2017 Jun;292(3):483-498. doi: 10.1007/s00438-017-1288-2. Epub 2017 Feb 1. Review.

4.

A single molecule study of a fluorescently labeled telomestatin derivative and G-quadruplex interactions.

Maleki P, Ma Y, Iida K, Nagasawa K, Balci H.

Nucleic Acids Res. 2017 Jan 9;45(1):288-295. doi: 10.1093/nar/gkw1090. Epub 2016 Nov 29.

5.

A Comparative Study of G-Quadruplex Unfolding and DNA Reeling Activities of Human RECQ5 Helicase.

Budhathoki JB, Maleki P, Roy WA, Janscak P, Yodh JG, Balci H.

Biophys J. 2016 Jun 21;110(12):2585-2596. doi: 10.1016/j.bpj.2016.05.016.

6.

G-Quadruplex-Enabling Sequence within the Human Tyrosine Hydroxylase Promoter Differentially Regulates Transcription.

Farhath MM, Thompson M, Ray S, Sewell A, Balci H, Basu S.

Biochemistry. 2015 Sep 15;54(36):5533-45. doi: 10.1021/acs.biochem.5b00209. Epub 2015 Aug 28.

PMID:
26284527
7.

ATP-dependent G-quadruplex unfolding by Bloom helicase exhibits low processivity.

Budhathoki JB, Stafford EJ, Yodh JG, Balci H.

Nucleic Acids Res. 2015 Jul 13;43(12):5961-70. doi: 10.1093/nar/gkv531. Epub 2015 May 18.

8.

RecQ-core of BLM unfolds telomeric G-quadruplex in the absence of ATP.

Budhathoki JB, Ray S, Urban V, Janscak P, Yodh JG, Balci H.

Nucleic Acids Res. 2014 Oct;42(18):11528-45. doi: 10.1093/nar/gku856. Epub 2014 Sep 22.

9.

G-quadruplex formation in telomeres enhances POT1/TPP1 protection against RPA binding.

Ray S, Bandaria JN, Qureshi MH, Yildiz A, Balci H.

Proc Natl Acad Sci U S A. 2014 Feb 25;111(8):2990-5. doi: 10.1073/pnas.1321436111. Epub 2014 Feb 10.

10.

RPA-mediated unfolding of systematically varying G-quadruplex structures.

Ray S, Qureshi MH, Malcolm DW, Budhathoki JB, Celik U, Balci H.

Biophys J. 2013 May 21;104(10):2235-45. doi: 10.1016/j.bpj.2013.04.004.

11.

Direct imaging of single UvrD helicase dynamics on long single-stranded DNA.

Lee KS, Balci H, Jia H, Lohman TM, Ha T.

Nat Commun. 2013;4:1878. doi: 10.1038/ncomms2882.

12.

Replication protein A unfolds G-quadruplex structures with varying degrees of efficiency.

Qureshi MH, Ray S, Sewell AL, Basu S, Balci H.

J Phys Chem B. 2012 May 17;116(19):5588-94. doi: 10.1021/jp300546u. Epub 2012 May 3.

13.

Single-molecule nanopositioning: structural transitions of a helicase-DNA complex during ATP hydrolysis.

Balci H, Arslan S, Myong S, Lohman TM, Ha T.

Biophys J. 2011 Aug 17;101(4):976-84. doi: 10.1016/j.bpj.2011.07.010.

14.

Advances in single-molecule fluorescence methods for molecular biology.

Joo C, Balci H, Ishitsuka Y, Buranachai C, Ha T.

Annu Rev Biochem. 2008;77:51-76. doi: 10.1146/annurev.biochem.77.070606.101543. Review.

PMID:
18412538
15.

Three-dimensional particle tracking via bifocal imaging.

Toprak E, Balci H, Blehm BH, Selvin PR.

Nano Lett. 2007 Jul;7(7):2043-5. Epub 2007 Jun 21. Review.

PMID:
17583964
16.

Fluorescence Imaging with One-Nanometer Accuracy (FIONA).

Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E.

CSH Protoc. 2007 Oct 1;2007:pdb.top27. doi: 10.1101/pdb.top27.

PMID:
21356960
17.

Fluorescence Imaging with One-Nanometer Accuracy (FIONA) of Cy3-DNA under Deoxygenation Conditions.

Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E.

CSH Protoc. 2007 Oct 1;2007:pdb.prot4868. doi: 10.1101/pdb.prot4868.

PMID:
21356956
18.

Constructing Sample Chambers for Fluorescence Imaging with One-Nanometer Accuracy (FIONA).

Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E.

CSH Protoc. 2007 Oct 1;2007:pdb.prot4867. doi: 10.1101/pdb.prot4867.

PMID:
21356955
19.

Data Analysis Methods for Fluorescence Imaging with One-Nanometer Accuracy (FIONA).

Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E.

CSH Protoc. 2007 Oct 1;2007:pdb.ip46. doi: 10.1101/pdb.ip46.

PMID:
21356943
20.

Equipment Setup for Fluorescence Imaging with One-Nanometer Accuracy (FIONA).

Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E.

CSH Protoc. 2007 Oct 1;2007:pdb.ip45. doi: 10.1101/pdb.ip45.

PMID:
21356942

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