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Items: 1 to 20 of 102

1.

Horizontal gene transfer in human-associated microorganisms inferred by phylogenetic reconstruction and reconciliation.

Jeong H, Arif B, Caetano-Anollés G, Kim KM, Nasir A.

Sci Rep. 2019 Apr 11;9(1):5953. doi: 10.1038/s41598-019-42227-5.

2.

Testing Empirical Support for Evolutionary Models that Root the Tree of Life.

Caetano-Anollés D, Nasir A, Kim KM, Caetano-Anollés G.

J Mol Evol. 2019 Apr;87(2-3):131-142. doi: 10.1007/s00239-019-09891-7. Epub 2019 Mar 18.

3.

Ancestrality and Mosaicism of Giant Viruses Supporting the Definition of the Fourth TRUC of Microbes.

Colson P, Levasseur A, La Scola B, Sharma V, Nasir A, Pontarotti P, Caetano-Anollés G, Raoult D.

Front Microbiol. 2018 Nov 27;9:2668. doi: 10.3389/fmicb.2018.02668. eCollection 2018.

4.

Correction to: Genome-wide analysis of the MYB-CC gene family of maize.

Bai J, Sun F, Wang M, Su L, Li R, Caetano-Anollés G.

Genetica. 2019 Feb;147(1):11. doi: 10.1007/s10709-018-0045-8.

PMID:
30382438
5.

Rooting Phylogenies and the Tree of Life While Minimizing Ad Hoc and Auxiliary Assumptions.

Caetano-Anollés G, Nasir A, Kim KM, Caetano-Anollés D.

Evol Bioinform Online. 2018 Oct 20;14:1176934318805101. doi: 10.1177/1176934318805101. eCollection 2018. Review.

6.

Evolution of macromolecular structure: a 'double tale' of biological accretion and diversification.

Caetano-Anollés D, Caetano-Anollés K, Caetano-Anollés G.

Sci Prog. 2018 Oct 1;101(4):360-383. doi: 10.3184/003685018X15379391431599. Epub 2018 Oct 8.

PMID:
30296968
7.

Metabolite-Centric Reporter Pathway and Tripartite Network Analysis of Arabidopsis Under Cold Stress.

Koç I, Yuksel I, Caetano-Anollés G.

Front Bioeng Biotechnol. 2018 Sep 11;6:121. doi: 10.3389/fbioe.2018.00121. eCollection 2018.

8.

Genome-wide analysis of the MYB-CC gene family of maize.

Bai J, Sun F, Wang M, Su L, Li R, Caetano-Anollés G.

Genetica. 2019 Feb;147(1):1-9. doi: 10.1007/s10709-018-0042-y. Epub 2018 Sep 21. Erratum in: Genetica. 2018 Oct 31;:.

PMID:
30242535
9.

Archaea-First and the Co-Evolutionary Diversification of Domains of Life.

Staley JT, Caetano-Anollés G.

Bioessays. 2018 Aug;40(8):e1800036. doi: 10.1002/bies.201800036. Epub 2018 Jun 26. Review.

PMID:
29944192
10.

Order and polarity in character state transformation models that root the tree of life.

Caetano-Anollés K, Caetano-Anollés D, Nasir A, Kim KM, Caetano-Anollés G.

Biochimie. 2018 Jun;149:135-136. doi: 10.1016/j.biochi.2018.04.001. Epub 2018 Apr 7.

PMID:
29631013
11.
12.

Do Viruses Exchange Genes across Superkingdoms of Life?

Malik SS, Azem-E-Zahra S, Kim KM, Caetano-Anollés G, Nasir A.

Front Microbiol. 2017 Oct 31;8:2110. doi: 10.3389/fmicb.2017.02110. eCollection 2017.

13.

RubisCO and the Search for Biomolecular Culprits of Planetary Change.

Caetano-Anollés G.

Bioessays. 2017 Nov;39(11). doi: 10.1002/bies.201700174. Epub 2017 Oct 13. No abstract available.

PMID:
29027685
14.

Phylogenetic Tracings of Proteome Size Support the Gradual Accretion of Protein Structural Domains and the Early Origin of Viruses from Primordial Cells.

Nasir A, Kim KM, Caetano-Anollés G.

Front Microbiol. 2017 Jun 23;8:1178. doi: 10.3389/fmicb.2017.01178. eCollection 2017.

15.

Long-term evolution of viruses: A Janus-faced balance.

Nasir A, Kim KM, Caetano-Anollés G.

Bioessays. 2017 Aug;39(8). doi: 10.1002/bies.201700026. Epub 2017 Jun 16. Review.

PMID:
28621804
16.

Erratum to: Genomic characterization of plant cell wall degrading enzymes and in silico analysis of xylanases and polygalacturonases of Fusarium virguliforme.

Chang HX, Yendrek CR, Caetano-Anolles G, Hartman GL.

BMC Microbiol. 2017 May 10;17(1):110. doi: 10.1186/s12866-017-1020-8. No abstract available.

17.

The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data.

Koç I, Caetano-Anollés G.

PLoS One. 2017 May 3;12(5):e0176129. doi: 10.1371/journal.pone.0176129. eCollection 2017.

18.

Identification of Capsid/Coat Related Protein Folds and Their Utility for Virus Classification.

Nasir A, Caetano-Anollés G.

Front Microbiol. 2017 Mar 10;8:380. doi: 10.3389/fmicb.2017.00380. eCollection 2017.

19.

Mimivirus: leading the way in the discovery of giant viruses of amoebae.

Colson P, La Scola B, Levasseur A, Caetano-Anollés G, Raoult D.

Nat Rev Microbiol. 2017 Apr;15(4):243-254. doi: 10.1038/nrmicro.2016.197. Epub 2017 Feb 27. Review.

PMID:
28239153
20.

Commentary: History of the ribosome and the origin of translation.

Caetano-Anollés D, Caetano-Anollés G.

Front Mol Biosci. 2017 Jan 10;3:87. doi: 10.3389/fmolb.2016.00087. eCollection 2016. No abstract available.

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