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Items: 9

1.

Persistent Organic Pollutants in Food: Contamination Sources, Health Effects and Detection Methods.

Guo W, Pan B, Sakkiah S, Yavas G, Ge W, Zou W, Tong W, Hong H.

Int J Environ Res Public Health. 2019 Nov 8;16(22). pii: E4361. doi: 10.3390/ijerph16224361. Review.

2.

dnAQET: a framework to compute a consolidated metric for benchmarking quality of de novo assemblies.

Yavas G, Hong H, Xiao W.

BMC Genomics. 2019 Sep 11;20(1):706. doi: 10.1186/s12864-019-6070-x.

3.

Direct comparison of performance of single nucleotide variant calling in human genome with alignment-based and assembly-based approaches.

Wu L, Yavas G, Hong H, Tong W, Xiao W.

Sci Rep. 2017 Sep 8;7(1):10963. doi: 10.1038/s41598-017-10826-9.

4.

Challenges, Solutions, and Quality Metrics of Personal Genome Assembly in Advancing Precision Medicine.

Xiao W, Wu L, Yavas G, Simonyan V, Ning B, Hong H.

Pharmaceutics. 2016 Apr 22;8(2). pii: E15. doi: 10.3390/pharmaceutics8020015. Review.

5.

DB2: a probabilistic approach for accurate detection of tandem duplication breakpoints using paired-end reads.

Yavaş G, Koyutürk M, Gould MP, McMahon S, LaFramboise T.

BMC Genomics. 2014 Mar 5;15:175. doi: 10.1186/1471-2164-15-175.

6.

COKGEN: a software for the identification of rare copy number variation from SNP microarrays.

Yavaş G, Koyutürk M, Ozsoyoğlu M, Gould MP, Laframboise T.

Pac Symp Biocomput. 2010:371-82.

7.

An optimization framework for unsupervised identification of rare copy number variation from SNP array data.

Yavas G, Koyutürk M, Ozsoyoğlu M, Gould MP, LaFramboise T.

Genome Biol. 2009;10(10):R119. doi: 10.1186/gb-2009-10-10-r119. Epub 2009 Oct 23.

8.

Corrigendum for Elliott,B. et al., 'PathCase pathways database system', Bioinformatics, Nov. 2008, 24(21), pp. 2526-2533.

Elliott B, Kirac M, Cakmak A, Yavas G, Mayes S, Cheng E, Wang Y, Gupta C, Ozsoyoglu G, Ozsoyoglu ZM.

Bioinformatics. 2009 Oct 15;25(20):2773. doi: 10.1093/bioinformatics/btp520. Epub 2009 Aug 27. No abstract available.

PMID:
19713414
9.

PathCase: pathways database system.

Elliott B, Kirac M, Cakmak A, Yavas G, Mayes S, Cheng E, Wang Y, Gupta C, Ozsoyoglu G, Meral Ozsoyoglu Z.

Bioinformatics. 2008 Nov 1;24(21):2526-33. doi: 10.1093/bioinformatics/btn459. Epub 2008 Aug 26.

PMID:
18728044

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