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Items: 1 to 20 of 118

1.

HiPPO and PANDA: Two Bioinformatics Tools to Support Analysis of Mass Cytometry Data.

Pirrò S, Spada F, Gadaleta E, Ferrentino F, Thorn GJ, Cesareni G, Chelala C.

J Comput Biol. 2019 Dec 20. doi: 10.1089/cmb.2019.0384. [Epub ahead of print]

PMID:
31855463
2.

Erratum: Nepravishta, R., et al. CoCUN, a Novel Ubiquitin Binding Domain Identified in N4BP1. Biomolecules 2019, 9, 284.

Nepravishta R, Ferrentino F, Mandaliti W, Mattioni A, Weber J, Polo S, Castagnoli L, Cesareni G, Paci M, Santonico E.

Biomolecules. 2019 Nov 28;9(12). pii: E803. doi: 10.3390/biom9120803.

3.

SIGNOR 2.0, the SIGnaling Network Open Resource 2.0: 2019 update.

Licata L, Lo Surdo P, Iannuccelli M, Palma A, Micarelli E, Perfetto L, Peluso D, Calderone A, Castagnoli L, Cesareni G.

Nucleic Acids Res. 2020 Jan 8;48(D1):D504-D510. doi: 10.1093/nar/gkz949.

PMID:
31665520
4.

Myo-REG: A Portal for Signaling Interactions in Muscle Regeneration.

Palma A, Cerquone Perpetuini A, Ferrentino F, Fuoco C, Gargioli C, Giuliani G, Iannuccelli M, Licata L, Micarelli E, Paoluzi S, Perfetto L, Petrilli LL, Reggio A, Rosina M, Sacco F, Vumbaca S, Zuccotti A, Castagnoli L, Cesareni G.

Front Physiol. 2019 Sep 27;10:1216. doi: 10.3389/fphys.2019.01216. eCollection 2019.

5.

CancerGeneNet: linking driver genes to cancer hallmarks.

Iannuccelli M, Micarelli E, Surdo PL, Palma A, Perfetto L, Rozzo I, Castagnoli L, Licata L, Cesareni G.

Nucleic Acids Res. 2020 Jan 8;48(D1):D416-D421. doi: 10.1093/nar/gkz871.

6.

Assessment of network module identification across complex diseases.

Choobdar S, Ahsen ME, Crawford J, Tomasoni M, Fang T, Lamparter D, Lin J, Hescott B, Hu X, Mercer J, Natoli T, Narayan R; DREAM Module Identification Challenge Consortium, Subramanian A, Zhang JD, Stolovitzky G, Kutalik Z, Lage K, Slonim DK, Saez-Rodriguez J, Cowen LJ, Bergmann S, Marbach D.

Nat Methods. 2019 Sep;16(9):843-852. doi: 10.1038/s41592-019-0509-5. Epub 2019 Aug 30.

7.

CoCUN, a Novel Ubiquitin Binding Domain Identified in N4BP1.

Nepravishta R, Ferrentino F, Mandaliti W, Mattioni A, Weber J, Polo S, Castagnoli L, Cesareni G, Paci M, Santonico E.

Biomolecules. 2019 Jul 17;9(7). pii: E284. doi: 10.3390/biom9070284. Erratum in: Biomolecules. 2019 Nov 28;9(12):.

8.

Metformin Delays Satellite Cell Activation and Maintains Quiescence.

Pavlidou T, Marinkovic M, Rosina M, Fuoco C, Vumbaca S, Gargioli C, Castagnoli L, Cesareni G.

Stem Cells Int. 2019 Apr 24;2019:5980465. doi: 10.1155/2019/5980465. eCollection 2019.

9.

Fibro-adipogenic progenitors of dystrophic mice are insensitive to NOTCH regulation of adipogenesis.

Marinkovic M, Fuoco C, Sacco F, Cerquone Perpetuini A, Giuliani G, Micarelli E, Pavlidou T, Petrilli LL, Reggio A, Riccio F, Spada F, Vumbaca S, Zuccotti A, Castagnoli L, Mann M, Gargioli C, Cesareni G.

Life Sci Alliance. 2019 Jun 25;2(3). pii: e201900437. doi: 10.26508/lsa.201900437. Print 2019 Jun.

10.

Lowe syndrome-linked endocytic adaptors direct membrane cycling kinetics with OCRL in Dictyostelium discoideum.

Luscher A, Fröhlich F, Barisch C, Littlewood C, Metcalfe J, Leuba F, Palma A, Pirruccello M, Cesareni G, Stagi M, Walther TC, Soldati T, De Camilli P, Swan LE.

Mol Biol Cell. 2019 Aug 1;30(17):2268-2282. doi: 10.1091/mbc.E18-08-0510. Epub 2019 Jun 19.

11.

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.

Menden MP, Wang D, Mason MJ, Szalai B, Bulusu KC, Guan Y, Yu T, Kang J, Jeon M, Wolfinger R, Nguyen T, Zaslavskiy M; AstraZeneca-Sanger Drug Combination DREAM Consortium, Jang IS, Ghazoui Z, Ahsen ME, Vogel R, Neto EC, Norman T, Tang EKY, Garnett MJ, Veroli GYD, Fawell S, Stolovitzky G, Guinney J, Dry JR, Saez-Rodriguez J.

Nat Commun. 2019 Jun 17;10(1):2674. doi: 10.1038/s41467-019-09799-2.

12.

Corrigendum: 3D hydrogel environment rejuvenates aged pericytes for skeletal muscle tissue engineering.

Fuoco C, Sangalli E, Vono R, Testa S, Sacchetti B, Latronico MVG, Bernardini S, Madeddu P, Cesareni G, Seliktar D, Rizzi R, Bearzi C, Cannata SM, Spinetti G, Gargioli C.

Front Physiol. 2019 Mar 11;10:199. doi: 10.3389/fphys.2019.00199. eCollection 2019.

13.

The immunosuppressant drug azathioprine restrains adipogenesis of muscle Fibro/Adipogenic Progenitors from dystrophic mice by affecting AKT signaling.

Reggio A, Spada F, Rosina M, Massacci G, Zuccotti A, Fuoco C, Gargioli C, Castagnoli L, Cesareni G.

Sci Rep. 2019 Mar 13;9(1):4360. doi: 10.1038/s41598-019-39538-y.

14.

CUBAN, a Case Study of Selective Binding: Structural Details of the Discrimination between Ubiquitin and NEDD8.

Santonico E, Nepravishta R, Mandaliti W, Castagnoli L, Cesareni G, Paci M.

Int J Mol Sci. 2019 Mar 8;20(5). pii: E1185. doi: 10.3390/ijms20051185.

15.

Selectivity of the CUBAN domain in the recognition of ubiquitin and NEDD8.

Castagnoli L, Mandaliti W, Nepravishta R, Valentini E, Mattioni A, Procopio R, Iannuccelli M, Polo S, Paci M, Cesareni G, Santonico E.

FEBS J. 2019 Feb;286(4):653-677. doi: 10.1111/febs.14752. Epub 2019 Feb 5.

16.

Gene Regulatory Network Modeling of Macrophage Differentiation Corroborates the Continuum Hypothesis of Polarization States.

Palma A, Jarrah AS, Tieri P, Cesareni G, Castiglione F.

Front Physiol. 2018 Nov 27;9:1659. doi: 10.3389/fphys.2018.01659. eCollection 2018.

17.

Group I Paks support muscle regeneration and counteract cancer-associated muscle atrophy.

Cerquone Perpetuini A, Re Cecconi AD, Chiappa M, Martinelli GB, Fuoco C, Desiderio G, Castagnoli L, Gargioli C, Piccirillo R, Cesareni G.

J Cachexia Sarcopenia Muscle. 2018 Aug;9(4):727-746. doi: 10.1002/jcsm.12303. Epub 2018 May 21.

18.

SPV: a JavaScript Signaling Pathway Visualizer.

Calderone A, Cesareni G.

Bioinformatics. 2018 Aug 1;34(15):2684-2686. doi: 10.1093/bioinformatics/bty188.

19.

Combining Phosphoproteomics Datasets and Literature Information to Reveal the Functional Connections in a Cell Phosphorylation Network.

Sacco F, Perfetto L, Cesareni G.

Proteomics. 2018 Mar;18(5-6):e1700311. doi: 10.1002/pmic.201700311. Review.

PMID:
29280302
20.

Single-cell mass cytometry and transcriptome profiling reveal the impact of graphene on human immune cells.

Orecchioni M, Bedognetti D, Newman L, Fuoco C, Spada F, Hendrickx W, Marincola FM, Sgarrella F, Rodrigues AF, Ménard-Moyon C, Cesareni G, Kostarelos K, Bianco A, Delogu LG.

Nat Commun. 2017 Oct 24;8(1):1109. doi: 10.1038/s41467-017-01015-3.

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