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Items: 1 to 20 of 22

1.

Organellomic data sets confirm a cryptic consensus on (unrooted) land-plant relationships and provide new insights into bryophyte molecular evolution.

Bell D, Lin Q, Gerelle WK, Joya S, Chang Y, Taylor ZN, Rothfels CJ, Larsson A, Villarreal JC, Li FW, Pokorny L, Szövényi P, Crandall-Stotler B, DeGironimo L, Floyd SK, Beerling DJ, Deyholos MK, von Konrat M, Ellis S, Shaw AJ, Chen T, Wong GK, Stevenson DW, Palmer JD, Graham SW.

Am J Bot. 2019 Dec 8. doi: 10.1002/ajb2.1397. [Epub ahead of print]

PMID:
31814117
2.

Evolution of chloroplast retrograde signaling facilitates green plant adaptation to land.

Zhao C, Wang Y, Chan KX, Marchant DB, Franks PJ, Randall D, Tee EE, Chen G, Ramesh S, Phua SY, Zhang B, Hills A, Dai F, Xue D, Gilliham M, Tyerman S, Nevo E, Wu F, Zhang G, Wong GK, Leebens-Mack JH, Melkonian M, Blatt MR, Soltis PS, Soltis DE, Pogson BJ, Chen ZH.

Proc Natl Acad Sci U S A. 2019 Mar 12;116(11):5015-5020. doi: 10.1073/pnas.1812092116. Epub 2019 Feb 25.

3.

Divergent gene expression levels between diploid and autotetraploid Tolmiea relative to the total transcriptome, the cell, and biomass.

Visger CJ, Wong GK, Zhang Y, Soltis PS, Soltis DE.

Am J Bot. 2019 Feb;106(2):280-291. doi: 10.1002/ajb2.1239. Epub 2019 Feb 19.

PMID:
30779448
4.

Host immunoglobulin G selectively identifies pathobionts in pediatric inflammatory bowel diseases.

Armstrong H, Alipour M, Valcheva R, Bording-Jorgensen M, Jovel J, Zaidi D, Shah P, Lou Y, Ebeling C, Mason AL, Lafleur D, Jerasi J, Wong GK, Madsen K, Carroll MW, Huynh HQ, Dieleman LA, Wine E.

Microbiome. 2019 Jan 3;7(1):1. doi: 10.1186/s40168-018-0604-3.

5.

Extending the Time Domain of Neuronal Silencing with Cryptophyte Anion Channelrhodopsins.

Govorunova EG, Sineshchekov OA, Hemmati R, Janz R, Morelle O, Melkonian M, Wong GK, Spudich JL.

eNeuro. 2018 Jul 10;5(3). pii: ENEURO.0174-18.2018. doi: 10.1523/ENEURO.0174-18.2018. eCollection 2018 May-Jun.

6.

Fern genomes elucidate land plant evolution and cyanobacterial symbioses.

Li FW, Brouwer P, Carretero-Paulet L, Cheng S, de Vries J, Delaux PM, Eily A, Koppers N, Kuo LY, Li Z, Simenc M, Small I, Wafula E, Angarita S, Barker MS, Bräutigam A, dePamphilis C, Gould S, Hosmani PS, Huang YM, Huettel B, Kato Y, Liu X, Maere S, McDowell R, Mueller LA, Nierop KGJ, Rensing SA, Robison T, Rothfels CJ, Sigel EM, Song Y, Timilsena PR, Van de Peer Y, Wang H, Wilhelmsson PKI, Wolf PG, Xu X, Der JP, Schluepmann H, Wong GK, Pryer KM.

Nat Plants. 2018 Jul;4(7):460-472. doi: 10.1038/s41477-018-0188-8. Epub 2018 Jul 2.

7.

Plastid phylogenomic analysis of green plants: A billion years of evolutionary history.

Gitzendanner MA, Soltis PS, Wong GK, Ruhfel BR, Soltis DE.

Am J Bot. 2018 Mar;105(3):291-301. doi: 10.1002/ajb2.1048. Epub 2018 Mar 30.

8.

Modeling the Colchicum autumnale Tubulin and a Comparison of Its Interaction with Colchicine to Human Tubulin.

Spasevska I, Ayoub AT, Winter P, Preto J, Wong GK, Dumontet C, Tuszynski JA.

Int J Mol Sci. 2017 Aug 2;18(8). pii: E1676. doi: 10.3390/ijms18081676.

9.

Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program.

Han JD, Li X, Jiang CK, Wong GK, Rothfels CJ, Rao GY.

Front Plant Sci. 2017 Apr 4;8:439. doi: 10.3389/fpls.2017.00439. eCollection 2017.

10.

The Expanding Family of Natural Anion Channelrhodopsins Reveals Large Variations in Kinetics, Conductance, and Spectral Sensitivity.

Govorunova EG, Sineshchekov OA, Rodarte EM, Janz R, Morelle O, Melkonian M, Wong GK, Spudich JL.

Sci Rep. 2017 Mar 3;7:43358. doi: 10.1038/srep43358.

11.

Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance.

Stevenson SR, Kamisugi Y, Trinh CH, Schmutz J, Jenkins JW, Grimwood J, Muchero W, Tuskan GA, Rensing SA, Lang D, Reski R, Melkonian M, Rothfels CJ, Li FW, Larsson A, Wong GK, Edwards TA, Cuming AC.

Plant Cell. 2016 Jun;28(6):1310-27. doi: 10.1105/tpc.16.00091. Epub 2016 May 18.

12.

Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics.

Jovel J, Patterson J, Wang W, Hotte N, O'Keefe S, Mitchel T, Perry T, Kao D, Mason AL, Madsen KL, Wong GK.

Front Microbiol. 2016 Apr 20;7:459. doi: 10.3389/fmicb.2016.00459. eCollection 2016.

13.

Gamma-Retrovirus Integration Marks Cell Type-Specific Cancer Genes: A Novel Profiling Tool in Cancer Genomics.

Gilroy KL, Terry A, Naseer A, de Ridder J, Allahyar A, Wang W, Carpenter E, Mason A, Wong GK, Cameron ER, Kilbey A, Neil JC.

PLoS One. 2016 Apr 20;11(4):e0154070. doi: 10.1371/journal.pone.0154070. eCollection 2016.

14.

The origin and evolution of phototropins.

Li FW, Rothfels CJ, Melkonian M, Villarreal JC, Stevenson DW, Graham SW, Wong GK, Mathews S, Pryer KM.

Front Plant Sci. 2015 Aug 12;6:637. doi: 10.3389/fpls.2015.00637. eCollection 2015.

15.

The evolutionary history of ferns inferred from 25 low-copy nuclear genes.

Rothfels CJ, Li FW, Sigel EM, Huiet L, Larsson A, Burge DO, Ruhsam M, Deyholos M, Soltis DE, Stewart CN Jr, Shaw SW, Pokorny L, Chen T, dePamphilis C, DeGironimo L, Chen L, Wei X, Sun X, Korall P, Stevenson DW, Graham SW, Wong GK, Pryer KM.

Am J Bot. 2015 Jul;102(7):1089-107. doi: 10.3732/ajb.1500089. Epub 2015 Jul 16.

16.

The Origin and Evolution of the Plant Cell Surface: Algal Integrin-Associated Proteins and a New Family of Integrin-Like Cytoskeleton-ECM Linker Proteins.

Becker B, Doan JM, Wustman B, Carpenter EJ, Chen L, Zhang Y, Wong GK, Melkonian M.

Genome Biol Evol. 2015 May 14;7(6):1580-9. doi: 10.1093/gbe/evv089.

17.

Lineage-specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales.

Brockington SF, Yang Y, Gandia-Herrero F, Covshoff S, Hibberd JM, Sage RF, Wong GK, Moore MJ, Smith SA.

New Phytol. 2015 Sep;207(4):1170-80. doi: 10.1111/nph.13441. Epub 2015 May 13.

18.

Phylogenetic pinpointing of a paleopolyploidy event within the flax genus (Linum) using transcriptomics.

Sveinsson S, McDill J, Wong GK, Li J, Li X, Deyholos MK, Cronk QC.

Ann Bot. 2014 Apr;113(5):753-61. doi: 10.1093/aob/mct306. Epub 2013 Dec 30.

19.

The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads.

Wang Z, Hobson N, Galindo L, Zhu S, Shi D, McDill J, Yang L, Hawkins S, Neutelings G, Datla R, Lambert G, Galbraith DW, Grassa CJ, Geraldes A, Cronk QC, Cullis C, Dash PK, Kumar PA, Cloutier S, Sharpe AG, Wong GK, Wang J, Deyholos MK.

Plant J. 2012 Nov;72(3):461-73. doi: 10.1111/j.1365-313X.2012.05093.x. Epub 2012 Aug 14.

20.

Large-insert genome analysis technology detects structural variation in Pseudomonas aeruginosa clinical strains from cystic fibrosis patients.

Hayden HS, Gillett W, Saenphimmachak C, Lim R, Zhou Y, Jacobs MA, Chang J, Rohmer L, D'Argenio DA, Palmieri A, Levy R, Haugen E, Wong GK, Brittnacher MJ, Burns JL, Miller SI, Olson MV, Kaul R.

Genomics. 2008 Jun;91(6):530-7. doi: 10.1016/j.ygeno.2008.02.005. Epub 2008 Apr 29.

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