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Items: 1 to 20 of 32

1.

Automatic Attribute Profiles.

Cavallaro G, Falco N, Dalla Mura M, Benediktsson JA.

IEEE Trans Image Process. 2017 Apr;26(4):1859-1872. doi: 10.1109/TIP.2017.2664667. Epub 2017 Feb 6.

PMID:
28182557
2.

Predicting copper-, iron-, and zinc-binding proteins in pathogenic species of the Paracoccidioides genus.

Tristão GB, Assunção Ldo P, Dos Santos LP, Borges CL, Silva-Bailão MG, Soares CM, Cavallaro G, Bailão AM.

Front Microbiol. 2015 Jan 9;5:761. doi: 10.3389/fmicb.2014.00761. eCollection 2014.

3.

MetalS(3), a database-mining tool for the identification of structurally similar metal sites.

Valasatava Y, Rosato A, Cavallaro G, Andreini C.

J Biol Inorg Chem. 2014 Aug;19(6):937-45. doi: 10.1007/s00775-014-1128-3. Epub 2014 Apr 4.

PMID:
24699831
4.

MetalS2: a tool for the structural alignment of minimal functional sites in metal-binding proteins and nucleic acids.

Andreini C, Cavallaro G, Rosato A, Valasatava Y.

J Chem Inf Model. 2013 Nov 25;53(11):3064-75. doi: 10.1021/ci400459w. Epub 2013 Oct 28.

PMID:
24117467
5.

MetalPDB: a database of metal sites in biological macromolecular structures.

Andreini C, Cavallaro G, Lorenzini S, Rosato A.

Nucleic Acids Res. 2013 Jan;41(Database issue):D312-9. doi: 10.1093/nar/gks1063. Epub 2012 Nov 15.

6.

FindGeo: a tool for determining metal coordination geometry.

Andreini C, Cavallaro G, Lorenzini S.

Bioinformatics. 2012 Jun 15;28(12):1658-60. doi: 10.1093/bioinformatics/bts246. Epub 2012 May 3.

PMID:
22556364
7.

Minimal functional sites allow a classification of zinc sites in proteins.

Andreini C, Bertini I, Cavallaro G.

PLoS One. 2011;6(10):e26325. doi: 10.1371/journal.pone.0026325. Epub 2011 Oct 17.

8.

Seeking the determinants of the elusive functions of Sco proteins.

Banci L, Bertini I, Cavallaro G, Ciofi-Baffoni S.

FEBS J. 2011 Jul;278(13):2244-62. doi: 10.1111/j.1742-4658.2011.08141.x. Epub 2011 May 19. Review.

9.

A simple protocol for the comparative analysis of the structure and occurrence of biochemical pathways across superkingdoms.

Andreini C, Bertini I, Cavallaro G, Decaria L, Rosato A.

J Chem Inf Model. 2011 Mar 28;51(3):730-8. doi: 10.1021/ci100392q. Epub 2011 Mar 10.

PMID:
21388232
10.

Principles and patterns in the interaction between mono-heme cytochrome c and its partners in electron transfer processes.

Bertini I, Cavallaro G, Rosato A.

Metallomics. 2011 Apr;3(4):354-62. doi: 10.1039/c0mt00108b. Epub 2011 Mar 1.

PMID:
21359406
11.

Bioinformatics in bioinorganic chemistry.

Bertini I, Cavallaro G.

Metallomics. 2010 Jan;2(1):39-51. doi: 10.1039/b912156k. Epub 2009 Sep 29. Review.

PMID:
21072373
12.

Genome-wide analysis of eukaryotic twin CX9C proteins.

Cavallaro G.

Mol Biosyst. 2010 Dec;6(12):2459-70. doi: 10.1039/c0mb00058b. Epub 2010 Oct 4.

PMID:
20922212
13.

A systematic investigation of multiheme c-type cytochromes in prokaryotes.

Sharma S, Cavallaro G, Rosato A.

J Biol Inorg Chem. 2010 May;15(4):559-71. doi: 10.1007/s00775-010-0623-4. Epub 2010 Jan 19.

PMID:
20084531
14.

Metal-MACiE: a database of metals involved in biological catalysis.

Andreini C, Bertini I, Cavallaro G, Holliday GL, Thornton JM.

Bioinformatics. 2009 Aug 15;25(16):2088-9. doi: 10.1093/bioinformatics/btp256. Epub 2009 Apr 15.

PMID:
19369503
15.

Structural analysis of metal sites in proteins: non-heme iron sites as a case study.

Andreini C, Bertini I, Cavallaro G, Najmanovich RJ, Thornton JM.

J Mol Biol. 2009 May 1;388(2):356-80. doi: 10.1016/j.jmb.2009.02.052. Epub 2009 Mar 2.

PMID:
19265704
16.

Genome-based analysis of heme biosynthesis and uptake in prokaryotic systems.

Cavallaro G, Decaria L, Rosato A.

J Proteome Res. 2008 Nov;7(11):4946-54. doi: 10.1021/pr8004309. Epub 2008 Sep 23.

PMID:
18808173
17.

Metal ions in biological catalysis: from enzyme databases to general principles.

Andreini C, Bertini I, Cavallaro G, Holliday GL, Thornton JM.

J Biol Inorg Chem. 2008 Nov;13(8):1205-18. doi: 10.1007/s00775-008-0404-5. Epub 2008 Jul 5.

PMID:
18604568
18.

Metals in the "omics" world: copper homeostasis and cytochrome c oxidase assembly in a new light.

Bertini I, Cavallaro G.

J Biol Inorg Chem. 2008 Jan;13(1):3-14. Epub 2007 Nov 7. Review.

PMID:
17987327
19.

Mycobacterial cells have dual nickel-cobalt sensors: sequence relationships and metal sites of metal-responsive repressors are not congruent.

Campbell DR, Chapman KE, Waldron KJ, Tottey S, Kendall S, Cavallaro G, Andreini C, Hinds J, Stoker NG, Robinson NJ, Cavet JS.

J Biol Chem. 2007 Nov 2;282(44):32298-310. Epub 2007 Aug 28.

20.

Evolution of mitochondrial-type cytochrome c domains and of the protein machinery for their assembly.

Bertini I, Cavallaro G, Rosato A.

J Inorg Biochem. 2007 Nov;101(11-12):1798-811. Epub 2007 Feb 13.

PMID:
17368779

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