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Items: 19

1.

Expression dynamics of repetitive DNA in early human embryonic development.

Yandım C, Karakülah G.

BMC Genomics. 2019 May 31;20(1):439. doi: 10.1186/s12864-019-5803-1.

2.

Inflammatory markers C-reactive protein and PLR in relation to HCC characteristics.

Suner A, Carr BI, Akkiz H, Uskudar O, Kuran S, Tokat Y, Tokmak S, Ballı T, Ulku A, AkCam T, Delik A, Arslan B, Doran F, YalCın K, Ekinci N, Yilmaz S, Ozakyol A, Yücesoy M, BahCeci HI, Polat KY, Şimsek H, Ormeci N, Sonsuz A, Demir M, KılıC M, Uygun A, Demir A, Altıntas E, Karakulah G, Temel T, Bektas A.

J Transl Sci. 2019 Jun;5(3). doi: 10.15761/JTS.1000260. Epub 2018 Jun 22.

3.

C-Reactive Protein and Platelet-Lymphocyte Ratio as Potential Tumor Markers in Low-Alpha-Fetoprotein Hepatocellular Carcinoma.

Suner A, Carr BI, Akkiz H, Karakülah G, Üsküdar O, Yalçın K, Kuran S, Tokat Y, Yilmaz S, Özakyol A, Tokmak S, Ballı T, Yücesoy M, Bahçeci Hİ, Ülkü A, Akçam T, Polat KY, Ekinci N, Şimşek H, Örmeci N, Sonsuz A, Demir M, Kılıç M, Uygun A, Demir A, Delik A, Arslan B, Doran F, Altıntaş E, Temel T, Bektaş A.

Oncology. 2019;96(1):25-32. doi: 10.1159/000492473. Epub 2018 Oct 18.

PMID:
30336489
4.

In silico Phylogenetic Analysis of hAT Transposable Elements in Plants.

Karakülah G, Pavlopoulou A.

Genes (Basel). 2018 Jun 6;9(6). pii: E284. doi: 10.3390/genes9060284.

5.

RTFAdb: A database of computationally predicted associations between retrotransposons and transcription factors in the human and mouse genomes.

Karakülah G.

Genomics. 2018 Sep;110(5):257-262. doi: 10.1016/j.ygeno.2017.11.002. Epub 2017 Nov 17.

PMID:
29155231
6.

Regulation of Noncoding Transcriptome in Developing Photoreceptors by Rod Differentiation Factor NRL.

Zelinger L, Karakülah G, Chaitankar V, Kim JW, Yang HJ, Brooks MJ, Swaroop A.

Invest Ophthalmol Vis Sci. 2017 Sep 1;58(11):4422-4435. doi: 10.1167/iovs.17-21805.

7.

Discovery and Annotation of Plant Endogenous Target Mimicry Sequences from Public Transcriptome Libraries: A Case Study of Prunus persica.

Karakülah G.

J Integr Bioinform. 2017 Jun 28;14(4). pii: /j/jib.2017.14.issue-4/jib-2017-0009/jib-2017-0009.xml. doi: 10.1515/jib-2017-0009.

8.

PlanTEnrichment: A tool for enrichment analysis of transposable elements in plants.

Karakülah G, Suner A.

Genomics. 2017 Oct;109(5-6):336-340. doi: 10.1016/j.ygeno.2017.05.008. Epub 2017 Jun 1.

9.

MicroRNA exocytosis by large dense-core vesicle fusion.

Gümürdü A, Yildiz R, Eren E, Karakülah G, Ünver T, Genç Ş, Park Y.

Sci Rep. 2017 Mar 30;7:45661. doi: 10.1038/srep45661.

10.

Differential Expression of Hyperhydricity Responsive Peach miRNAs.

Diler E, Unver T, Karakülah G.

J Integr Bioinform. 2016 Dec 31;13(5):308. doi: 10.2390/biecoll-jib-2016-308.

PMID:
28187422
11.

PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs).

Karakülah G, Yücebilgili Kurtoğlu K, Unver T.

PLoS One. 2016 Dec 9;11(12):e0167698. doi: 10.1371/journal.pone.0167698. eCollection 2016.

12.

NRL-Regulated Transcriptome Dynamics of Developing Rod Photoreceptors.

Kim JW, Yang HJ, Brooks MJ, Zelinger L, Karakülah G, Gotoh N, Boleda A, Gieser L, Giuste F, Whitaker DT, Walton A, Villasmil R, Barb JJ, Munson PJ, Kaya KD, Chaitankar V, Cogliati T, Swaroop A.

Cell Rep. 2016 Nov 22;17(9):2460-2473. doi: 10.1016/j.celrep.2016.10.074.

13.

Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research.

Chaitankar V, Karakülah G, Ratnapriya R, Giuste FO, Brooks MJ, Swaroop A.

Prog Retin Eye Res. 2016 Nov;55:1-31. doi: 10.1016/j.preteyeres.2016.06.001. Epub 2016 Jun 11. Review.

14.

StatXFinder: a web-based self-directed tool that provides appropriate statistical test selection for biomedical researchers in their scientific studies.

Suner A, Karakülah G, Koşaner Ö, Dicle O.

Springerplus. 2015 Oct 22;4:633. doi: 10.1186/s40064-015-1421-9. eCollection 2015.

15.

Computer based extraction of phenoptypic features of human congenital anomalies from the digital literature with natural language processing techniques.

Karakülah G, Dicle O, Koşaner O, Suner A, Birant ÇC, Berber T, Canbek S.

Stud Health Technol Inform. 2014;205:570-4.

PMID:
25160250
16.
17.

A data-driven living review for pharmacogenomic decision support in cancer treatment.

Karakülah G, Suner A, Adlassnig KP, Samwald M.

Stud Health Technol Inform. 2012;180:688-92.

PMID:
22874279
18.

Early biventricular molecular responses to an acute myocardial infarction.

Erdal C, Karakülah G, Fermancı E, Kunter I, Silistreli E, Canda T, Erdal E, Hepaguslar H.

Int J Med Sci. 2012;9(1):74-82. Epub 2011 Nov 30.

19.

mESAdb: microRNA expression and sequence analysis database.

Kaya KD, Karakülah G, Yakicier CM, Acar AC, Konu O.

Nucleic Acids Res. 2011 Jan;39(Database issue):D170-80. doi: 10.1093/nar/gkq1256.

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