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Items: 1 to 20 of 36

1.

Serial Femtosecond X-Ray Diffraction of HIV-1 Gag MA-IP6 Microcrystals at Ambient Temperature.

I Ciftci H, G Sierra R, Yoon CH, Su Z, Tateishi H, Koga R, Kotaro K, Yumoto F, Senda T, Liang M, Wakatsuki S, Otsuka M, Fujita M, DeMirci H.

Int J Mol Sci. 2019 Apr 3;20(7). pii: E1675. doi: 10.3390/ijms20071675.

2.

Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography.

Yamashita K, Kuwabara N, Nakane T, Murai T, Mizohata E, Sugahara M, Pan D, Masuda T, Suzuki M, Sato T, Kodan A, Yamaguchi T, Nango E, Tanaka T, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Manya H, Endo T, Kato R, Senda T, Kato H, Iwata S, Ago H, Yamamoto M, Yumoto F, Nakatsu T.

IUCrJ. 2017 Aug 8;4(Pt 5):639-647. doi: 10.1107/S2052252517008557. eCollection 2017 Sep 1.

3.

XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.

Thomaston JL, Woldeyes RA, Nakane T, Yamashita A, Tanaka T, Koiwai K, Brewster AS, Barad BA, Chen Y, Lemmin T, Uervirojnangkoorn M, Arima T, Kobayashi J, Masuda T, Suzuki M, Sugahara M, Sauter NK, Tanaka R, Nureki O, Tono K, Joti Y, Nango E, Iwata S, Yumoto F, Fraser JS, DeGrado WF.

Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):13357-13362. doi: 10.1073/pnas.1705624114. Epub 2017 Aug 23.

4.

Characterization of Heme Orientational Disorder in a Myoglobin Reconstituted with a Trifluoromethyl-Group-Substituted Heme Cofactor.

Kanai Y, Harada A, Shibata T, Nishimura R, Namiki K, Watanabe M, Nakamura S, Yumoto F, Senda T, Suzuki A, Neya S, Yamamoto Y.

Biochemistry. 2017 Aug 29;56(34):4500-4508. doi: 10.1021/acs.biochem.7b00457. Epub 2017 Aug 16.

PMID:
28758387
5.

Hydroxyethyl cellulose matrix applied to serial crystallography.

Sugahara M, Nakane T, Masuda T, Suzuki M, Inoue S, Song C, Tanaka R, Nakatsu T, Mizohata E, Yumoto F, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Nureki O, Numata K, Nango E, Iwata S.

Sci Rep. 2017 Apr 6;7(1):703. doi: 10.1038/s41598-017-00761-0.

6.

Oil-free hyaluronic acid matrix for serial femtosecond crystallography.

Sugahara M, Song C, Suzuki M, Masuda T, Inoue S, Nakane T, Yumoto F, Nango E, Tanaka R, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Nureki O, Numata K, Iwata S.

Sci Rep. 2016 Apr 18;6:24484. doi: 10.1038/srep24484.

7.

Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography.

Fukuda Y, Tse KM, Nakane T, Nakatsu T, Suzuki M, Sugahara M, Inoue S, Masuda T, Yumoto F, Matsugaki N, Nango E, Tono K, Joti Y, Kameshima T, Song C, Hatsui T, Yabashi M, Nureki O, Murphy ME, Inoue T, Iwata S, Mizohata E.

Proc Natl Acad Sci U S A. 2016 Mar 15;113(11):2928-33. doi: 10.1073/pnas.1517770113. Epub 2016 Feb 29. Erratum in: Proc Natl Acad Sci U S A. 2016 Apr 12;113(15):E2207.

8.

Dlx5 Homeodomain:DNA Complex: Structure, Binding and Effect of Mutations Related to Split Hand and Foot Malformation Syndrome.

Proudfoot A, Axelrod HL, Geralt M, Fletterick RJ, Yumoto F, Deacon AM, Elsliger MA, Wilson IA, Wüthrich K, Serrano P.

J Mol Biol. 2016 Mar 27;428(6):1130-1141. doi: 10.1016/j.jmb.2016.01.023. Epub 2016 Jan 29.

9.

The FKBP52 Cochaperone Acts in Synergy with β-Catenin to Potentiate Androgen Receptor Signaling.

Storer Samaniego C, Suh JH, Chattopadhyay A, Olivares K, Guy N, Sivils JC, Dey P, Yumoto F, Fletterick RJ, Strom AM, Gustafsson JÅ, Webb P, Cox MB.

PLoS One. 2015 Jul 24;10(7):e0134015. doi: 10.1371/journal.pone.0134015. eCollection 2015.

10.

Structure-based discovery of NANOG variant with enhanced properties to promote self-renewal and reprogramming of pluripotent stem cells.

Hayashi Y, Caboni L, Das D, Yumoto F, Clayton T, Deller MC, Nguyen P, Farr CL, Chiu HJ, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Tomoda K, Conklin BR, Wilson IA, Yamanaka S, Fletterick RJ.

Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4666-71. doi: 10.1073/pnas.1502855112. Epub 2015 Mar 30.

11.

Different Ca²⁺-sensitivities between the EF-hands of T- and L-plastins.

Miyakawa T, Shinomiya H, Yumoto F, Miyauchi Y, Tanaka H, Ojima T, Kato YS, Tanokura M.

Biochem Biophys Res Commun. 2012 Dec 14;429(3-4):137-41. doi: 10.1016/j.bbrc.2012.10.126. Epub 2012 Nov 7.

PMID:
23142595
12.

Structure of the Ca(2+)-saturated C-terminal domain of scallop troponin C in complex with a troponin I fragment.

Kato YS, Yumoto F, Tanaka H, Miyakawa T, Miyauchi Y, Takeshita D, Sawano Y, Ojima T, Ohtsuki I, Tanokura M.

Biol Chem. 2013 Jan;394(1):55-68. doi: 10.1515/hsz-2012-0152.

PMID:
23096565
13.

Structure of a novel winged-helix like domain from human NFRKB protein.

Kumar A, Möcklinghoff S, Yumoto F, Jaroszewski L, Farr CL, Grzechnik A, Nguyen P, Weichenberger CX, Chiu HJ, Klock HE, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Conklin BR, Fletterick RJ, Wilson IA.

PLoS One. 2012;7(9):e43761. doi: 10.1371/journal.pone.0043761. Epub 2012 Sep 11.

14.

Structural basis of coactivation of liver receptor homolog-1 by β-catenin.

Yumoto F, Nguyen P, Sablin EP, Baxter JD, Webb P, Fletterick RJ.

Proc Natl Acad Sci U S A. 2012 Jan 3;109(1):143-8. doi: 10.1073/pnas.1117036108. Epub 2011 Dec 20.

15.

Biological actions of green tea catechins on cardiac troponin C.

Tadano N, Du CK, Yumoto F, Morimoto S, Ohta M, Xie MF, Nagata K, Zhan DY, Lu QW, Miwa Y, Takahashi-Yanaga F, Tanokura M, Ohtsuki I, Sasaguri T.

Br J Pharmacol. 2010 Nov;161(5):1034-43. doi: 10.1111/j.1476-5381.2010.00942.x.

16.

Direct demonstration of the cross-bridge recovery stroke in muscle thick filaments in aqueous solution by using the hydration chamber.

Sugi H, Minoda H, Inayoshi Y, Yumoto F, Miyakawa T, Miyauchi Y, Tanokura M, Akimoto T, Kobayashi T, Chaen S, Sugiura S.

Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17396-401. doi: 10.1073/pnas.0809581105. Epub 2008 Nov 5. Erratum in: Proc Natl Acad Sci U S A. 2009 Jan 27;106(4):1291.

17.
18.

Synergistic activation of the Arabidopsis NADPH oxidase AtrbohD by Ca2+ and phosphorylation.

Ogasawara Y, Kaya H, Hiraoka G, Yumoto F, Kimura S, Kadota Y, Hishinuma H, Senzaki E, Yamagoe S, Nagata K, Nara M, Suzuki K, Tanokura M, Kuchitsu K.

J Biol Chem. 2008 Apr 4;283(14):8885-92. doi: 10.1074/jbc.M708106200. Epub 2008 Jan 23.

19.

Spectroscopic and ITC study of the conformational change upon Ca2+-binding in TnC C-lobe and TnI peptide complex from Akazara scallop striated muscle.

Yumoto F, Tanaka H, Nagata K, Miyauchi Y, Miyakawa T, Ojima T, Tanokura M.

Biochem Biophys Res Commun. 2008 Apr 25;369(1):109-14. Epub 2007 Dec 3.

PMID:
18054324
20.

Crystallization and preliminary X-ray analysis of the Ca2+-bound C-terminal lobe of troponin C in complex with a troponin I-derived peptide fragment from Akazara scallop.

Yumoto F, Nagata K, Miyauchi Y, Ojima T, Tanaka H, Nishita K, Ohtsuki I, Tanokura M.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Jun 1;63(Pt 6):535-7. Epub 2007 May 31.

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