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Items: 1 to 20 of 96

1.

Norine: update of the nonribosomal peptide resource.

Flissi A, Ricart E, Campart C, Chevalier M, Dufresne Y, Michalik J, Jacques P, Flahaut C, Lisacek F, Leclère V, Pupin M.

Nucleic Acids Res. 2019 Nov 6. pii: gkz1000. doi: 10.1093/nar/gkz1000. [Epub ahead of print]

PMID:
31691799
2.

Kendrick Mass Defect Approach Combined to NORINE Database for Molecular Formula Assignment of Nonribosomal Peptides.

Chevalier M, Ricart E, Hanozin E, Pupin M, Jacques P, Smargiasso N, De Pauw E, Lisacek F, Leclère V, Flahaut C.

J Am Soc Mass Spectrom. 2019 Oct 28. doi: 10.1007/s13361-019-02314-3. [Epub ahead of print]

PMID:
31659720
3.

The GlySpace Alliance: towards a collaborative global glycoinformatics community.

Aoki-Kinoshita KF, Lisacek F, Mazumder R, York WS, Packer NH.

Glycobiology. 2019 Oct 1. pii: cwz078. doi: 10.1093/glycob/cwz078. [Epub ahead of print] No abstract available.

PMID:
31573039
4.

Towards a standardized bioinformatics infrastructure for N- and O-glycomics.

Rojas-Macias MA, Mariethoz J, Andersson P, Jin C, Venkatakrishnan V, Aoki NP, Shinmachi D, Ashwood C, Madunic K, Zhang T, Miller RL, Horlacher O, Struwe WB, Watanabe Y, Okuda S, Levander F, Kolarich D, Rudd PM, Wuhrer M, Kettner C, Packer NH, Aoki-Kinoshita KF, Lisacek F, Karlsson NG.

Nat Commun. 2019 Jul 22;10(1):3275. doi: 10.1038/s41467-019-11131-x. Review.

5.

Updates to the Symbol Nomenclature for Glycans guidelines.

Neelamegham S, Aoki-Kinoshita K, Bolton E, Frank M, Lisacek F, Lütteke T, O'Boyle N, Packer NH, Stanley P, Toukach P, Varki A, Woods RJ; SNFG Discussion Group.

Glycobiology. 2019 Aug 20;29(9):620-624. doi: 10.1093/glycob/cwz045.

PMID:
31184695
6.

A targeted proteomics approach reveals a serum protein signature as diagnostic biomarker for resectable gastric cancer.

Shen Q, Polom K, Williams C, de Oliveira FMS, Guergova-Kuras M, Lisacek F, Karlsson NG, Roviello F, Kamali-Moghaddam M.

EBioMedicine. 2019 Jun;44:322-333. doi: 10.1016/j.ebiom.2019.05.044. Epub 2019 May 28.

7.

A Bioinformatics View of Glycan⁻Virus Interactions.

Le Mercier P, Mariethoz J, Lascano-Maillard J, Bonnardel F, Imberty A, Ricard-Blum S, Lisacek F.

Viruses. 2019 Apr 23;11(4). pii: E374. doi: 10.3390/v11040374. Review.

8.

Sweet and Sour Ehrlichia: Glycoproteomics and Phosphoproteomics Reveal New Players in Ehrlichia ruminantium Physiology and Pathogenesis.

Marcelino I, Colomé-Calls N, Holzmuller P, Lisacek F, Reynaud Y, Canals F, Vachiéry N.

Front Microbiol. 2019 Mar 15;10:450. doi: 10.3389/fmicb.2019.00450. eCollection 2019.

9.

Architecture and Evolution of Blade Assembly in β-propeller Lectins.

Bonnardel F, Kumar A, Wimmerova M, Lahmann M, Perez S, Varrot A, Lisacek F, Imberty A.

Structure. 2019 May 7;27(5):764-775.e3. doi: 10.1016/j.str.2019.02.002. Epub 2019 Mar 7.

PMID:
30853410
10.

Correction to "Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project".

Robin T, Bairoch A, Müller M, Lisacek F, Lane L.

J Proteome Res. 2019 Apr 5;18(4):1926-1927. doi: 10.1021/acs.jproteome.9b00113. Epub 2019 Feb 25. No abstract available.

PMID:
30802063
11.

rBAN: retro-biosynthetic analysis of nonribosomal peptides.

Ricart E, Leclère V, Flissi A, Mueller M, Pupin M, Lisacek F.

J Cheminform. 2019 Feb 8;11(1):13. doi: 10.1186/s13321-019-0335-x.

12.

GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical.

Alocci D, Mariethoz J, Gastaldello A, Gasteiger E, Karlsson NG, Kolarich D, Packer NH, Lisacek F.

J Proteome Res. 2019 Feb 1;18(2):664-677. doi: 10.1021/acs.jproteome.8b00766. Epub 2019 Jan 15.

PMID:
30574787
13.

SugarSketcher: Quick and Intuitive Online Glycan Drawing.

Alocci D, Suchánková P, Costa R, Hory N, Mariethoz J, Vařeková RS, Toukach P, Lisacek F.

Molecules. 2018 Dec 5;23(12). pii: E3206. doi: 10.3390/molecules23123206.

14.

UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands.

Bonnardel F, Mariethoz J, Salentin S, Robin X, Schroeder M, Perez S, Lisacek F, Imberty A.

Nucleic Acids Res. 2019 Jan 8;47(D1):D1236-D1244. doi: 10.1093/nar/gky832.

15.

A pipeline to translate glycosaminoglycan sequences into 3D models. Application to the exploration of glycosaminoglycan conformational space.

Clerc O, Mariethoz J, Rivet A, Lisacek F, Pérez S, Ricard-Blum S.

Glycobiology. 2019 Jan 1;29(1):36-44. doi: 10.1093/glycob/cwy084.

PMID:
30239692
16.

Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project.

Robin T, Bairoch A, Müller M, Lisacek F, Lane L.

J Proteome Res. 2018 Dec 7;17(12):4160-4170. doi: 10.1021/acs.jproteome.8b00392. Epub 2018 Sep 17. Erratum in: J Proteome Res. 2019 Apr 5;18(4):1926-1927.

PMID:
30175587
17.

Glycomics@ExPASy: Bridging the Gap.

Mariethoz J, Alocci D, Gastaldello A, Horlacher O, Gasteiger E, Rojas-Macias M, Karlsson NG, Packer NH, Lisacek F.

Mol Cell Proteomics. 2018 Nov;17(11):2164-2176. doi: 10.1074/mcp.RA118.000799. Epub 2018 Aug 10.

18.

Understanding the glycome: an interactive view of glycosylation from glycocompositions to glycoepitopes.

Alocci D, Ghraichy M, Barletta E, Gastaldello A, Mariethoz J, Lisacek F.

Glycobiology. 2018 Jun 1;28(6):349-362. doi: 10.1093/glycob/cwy019.

PMID:
29518231
19.

PepSweetener: A Web-Based Tool to Support Manual Annotation of Intact Glycopeptide MS Spectra.

Domagalski MJ, Alocci D, Almeida A, Kolarich D, Lisacek F.

Proteomics Clin Appl. 2018 Sep;12(5):e1700069. doi: 10.1002/prca.201700069. Epub 2017 Oct 30.

PMID:
28975713
20.

GlyTouCan: an accessible glycan structure repository.

Tiemeyer M, Aoki K, Paulson J, Cummings RD, York WS, Karlsson NG, Lisacek F, Packer NH, Campbell MP, Aoki NP, Fujita A, Matsubara M, Shinmachi D, Tsuchiya S, Yamada I, Pierce M, Ranzinger R, Narimatsu H, Aoki-Kinoshita KF.

Glycobiology. 2017 Oct 1;27(10):915-919. doi: 10.1093/glycob/cwx066.

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