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Items: 1 to 20 of 35

1.

Translocation intermediates of ubiquitin through an α-hemolysin nanopore: implications for detection of post-translational modifications.

Bonome EL, Cecconi F, Chinappi M.

Nanoscale. 2019 May 28;11(20):9920-9930. doi: 10.1039/c8nr10492a. Epub 2019 May 9.

PMID:
31069350
2.

Transport of active particles in an open-wedge channel.

Caprini L, Cecconi F, Marini Bettolo Marconi U.

J Chem Phys. 2019 Apr 14;150(14):144903. doi: 10.1063/1.5090104.

PMID:
30981222
3.

DCA for genome-wide epistasis analysis: the statistical genetics perspective.

Gao CY, Cecconi F, Vulpiani A, Zhou HJ, Aurell E.

Phys Biol. 2019 Jan 29;16(2):026002. doi: 10.1088/1478-3975/aafbe0.

PMID:
30605896
4.

Protein sequencing via nanopore based devices: a nanofluidics perspective.

Chinappi M, Cecconi F.

J Phys Condens Matter. 2018 May 23;30(20):204002. doi: 10.1088/1361-648X/aababe. Epub 2018 Mar 29.

PMID:
29595524
5.

Frequency-control of protein translocation across an oscillating nanopore.

Cecconi F, Shahzad MA, Marini Bettolo Marconi U, Vulpiani A.

Phys Chem Chem Phys. 2017 May 10;19(18):11260-11272. doi: 10.1039/c6cp08156h.

PMID:
28417122
6.

Driven diffusion against electrostatic or effective energy barrier across α-hemolysin.

Ansalone P, Chinappi M, Rondoni L, Cecconi F.

J Chem Phys. 2015 Oct 21;143(15):154109. doi: 10.1063/1.4933012.

PMID:
26493899
7.

Nanopore tweezers: voltage-controlled trapping and releasing of analytes.

Chinappi M, Luchian T, Cecconi F.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Sep;92(3):032714. doi: 10.1103/PhysRevE.92.032714. Epub 2015 Sep 15.

PMID:
26465505
8.

Multistep current signal in protein translocation through graphene nanopores.

Bonome EL, Lepore R, Raimondo D, Cecconi F, Tramontano A, Chinappi M.

J Phys Chem B. 2015 May 7;119(18):5815-23. doi: 10.1021/acs.jpcb.5b02172. Epub 2015 Apr 28.

PMID:
25866995
9.

Transport and fluctuation-dissipation relations in asymptotic and preasymptotic diffusion across channels with variable section.

Forte G, Cecconi F, Vulpiani A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Dec;90(6):062110. Epub 2014 Dec 3.

PMID:
25615047
10.

Exploring the Unfolding Pathway of Maltose Binding Proteins: An Integrated Computational Approach.

Guardiani C, Marino DD, Tramontano A, Chinappi M, Cecconi F.

J Chem Theory Comput. 2014 Sep 9;10(9):3589-97. doi: 10.1021/ct500283s.

PMID:
26588503
11.

Coarse-grained modeling of protein unspecifically bound to DNA.

Guardiani C, Cencini M, Cecconi F.

Phys Biol. 2014 Apr;11(2):026003. doi: 10.1088/1478-3975/11/2/026003. Epub 2014 Apr 1.

PMID:
24685517
12.

Protein transport across nanopores: a statistical mechanical perspective from coarse-grained modeling and approaches.

Cecconi F, Bacci M, Chinappi M.

Protein Pept Lett. 2014 Mar;21(3):227-34. Review.

PMID:
24370254
13.

Anomalous diffusion and response in branched systems: a simple analysis.

Forte G, Burioni R, Cecconi F, Vulpiani A.

J Phys Condens Matter. 2013 Nov 20;25(46):465106. doi: 10.1088/0953-8984/25/46/465106. Epub 2013 Oct 23.

PMID:
24153224
14.

Protein translocation in narrow pores: inferring bottlenecks from native structure topology.

Bacci M, Chinappi M, Casciola CM, Cecconi F.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Aug;88(2):022712. Epub 2013 Aug 14.

PMID:
24032869
15.

Role of denaturation in maltose binding protein translocation dynamics.

Bacci M, Chinappi M, Casciola CM, Cecconi F.

J Phys Chem B. 2012 Apr 12;116(14):4255-62. doi: 10.1021/jp300143x. Epub 2012 Apr 3.

PMID:
22429088
16.

A statistical model for translocation of structured polypeptide chains through nanopores.

Ammenti A, Cecconi F, Marini Bettolo Marconi U, Vulpiani A.

J Phys Chem B. 2009 Jul 30;113(30):10348-56. doi: 10.1021/jp900947f.

PMID:
19572676
17.

Temperature dependence of normal mode reconstructions of protein dynamics.

Piazza F, De Los Rios P, Cecconi F.

Phys Rev Lett. 2009 May 29;102(21):218104. Epub 2009 May 29.

PMID:
19519140
18.

Analyzing pathogenic mutations of C5 domain from cardiac myosin binding protein C through MD simulations.

Cecconi F, Guardiani C, Livi R.

Eur Biophys J. 2008 Jun;37(5):683-91. doi: 10.1007/s00249-008-0308-x. Epub 2008 Apr 1.

PMID:
18379775
19.

Stability and kinetic properties of C5-domain from myosin binding protein C and its mutants.

Guardiani C, Cecconi F, Livi R.

Biophys J. 2008 Feb 15;94(4):1403-11. Epub 2007 Oct 26.

20.

Computational analysis of folding and mutation properties of C5 domain of myosin binding protein C.

Guardiani C, Cecconi F, Livi R.

Proteins. 2008 Mar;70(4):1313-22.

PMID:
17876814

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