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Items: 15

1.

Overview of Relaxation Dispersion NMR Spectroscopy to Study Protein Dynamics and Protein-Ligand Interactions.

Walinda E, Morimoto D, Sugase K.

Curr Protoc Protein Sci. 2018 Apr;92(1):e57. doi: 10.1002/cpps.57.

PMID:
30040207
2.

Resolving biomolecular motion and interactions by R2 and R relaxation dispersion NMR.

Walinda E, Morimoto D, Sugase K.

Methods. 2018 Sep 15;148:28-38. doi: 10.1016/j.ymeth.2018.04.026. Epub 2018 Apr 26. Review.

PMID:
29704666
3.

Cooperative Domain Formation by Homologous Motifs in HOIL-1L and SHARPIN Plays A Crucial Role in LUBAC Stabilization.

Fujita H, Tokunaga A, Shimizu S, Whiting AL, Aguilar-Alonso F, Takagi K, Walinda E, Sasaki Y, Shimokawa T, Mizushima T, Ohki I, Ariyoshi M, Tochio H, Bernal F, Shirakawa M, Iwai K.

Cell Rep. 2018 Apr 24;23(4):1192-1204. doi: 10.1016/j.celrep.2018.03.112.

4.

Isolation and characterization of a minimal building block of polyubiquitin fibrils.

Morimoto D, Walinda E, Shinke M, Sugase K, Shirakawa M.

Sci Rep. 2018 Feb 9;8(1):2711. doi: 10.1038/s41598-018-21144-z.

5.

Real-Time Observation of the Interaction between Thioflavin T and an Amyloid Protein by Using High-Sensitivity Rheo-NMR.

Iwakawa N, Morimoto D, Walinda E, Kawata Y, Shirakawa M, Sugase K.

Int J Mol Sci. 2017 Oct 28;18(11). pii: E2271. doi: 10.3390/ijms18112271.

6.

High-Sensitivity Rheo-NMR Spectroscopy for Protein Studies.

Morimoto D, Walinda E, Iwakawa N, Nishizawa M, Kawata Y, Yamamoto A, Shirakawa M, Scheler U, Sugase K.

Anal Chem. 2017 Jul 18;89(14):7286-7290. doi: 10.1021/acs.analchem.7b01816. Epub 2017 Jul 5.

7.

Biological and Physicochemical Functions of Ubiquitylation Revealed by Synthetic Chemistry Approaches.

Morimoto D, Walinda E, Sugase K, Shirakawa M.

Int J Mol Sci. 2017 May 27;18(6). pii: E1145. doi: 10.3390/ijms18061145. Review.

8.

F 1 F 2-selective NMR spectroscopy.

Walinda E, Morimoto D, Shirakawa M, Sugase K.

J Biomol NMR. 2017 May;68(1):41-52. doi: 10.1007/s10858-017-0113-x. Epub 2017 May 4.

PMID:
28474302
9.

Practical considerations for investigation of protein conformational dynamics by 15N R relaxation dispersion.

Walinda E, Morimoto D, Shirakawa M, Sugase K.

J Biomol NMR. 2017 Mar;67(3):201-209. doi: 10.1007/s10858-017-0097-6. Epub 2017 Feb 28.

PMID:
28243767
10.

Backbone resonance assignments of monomeric SOD1 in dilute and crowded environments.

Iwakawa N, Morimoto D, Walinda E, Sugase K, Shirakawa M.

Biomol NMR Assign. 2017 Apr;11(1):81-84. doi: 10.1007/s12104-016-9724-5. Epub 2016 Dec 26.

PMID:
28025808
11.

Ubiquitylation Directly Induces Fold Destabilization of Proteins.

Morimoto D, Walinda E, Fukada H, Sugase K, Shirakawa M.

Sci Rep. 2016 Dec 19;6:39453. doi: 10.1038/srep39453.

12.

Dual Function of Phosphoubiquitin in E3 Activation of Parkin.

Walinda E, Morimoto D, Sugase K, Shirakawa M.

J Biol Chem. 2016 Aug 5;291(32):16879-91. doi: 10.1074/jbc.M116.728600. Epub 2016 Jun 9.

13.

Efficient identification and analysis of chemical exchange in biomolecules by R1ρ relaxation dispersion with Amaterasu.

Walinda E, Morimoto D, Nishizawa M, Shirakawa M, Sugase K.

Bioinformatics. 2016 Aug 15;32(16):2539-41. doi: 10.1093/bioinformatics/btw188. Epub 2016 Apr 8.

PMID:
27153625
14.

The unexpected role of polyubiquitin chains in the formation of fibrillar aggregates.

Morimoto D, Walinda E, Fukada H, Sou YS, Kageyama S, Hoshino M, Fujii T, Tsuchiya H, Saeki Y, Arita K, Ariyoshi M, Tochio H, Iwai K, Namba K, Komatsu M, Tanaka K, Shirakawa M.

Nat Commun. 2015 Jan 20;6:6116. doi: 10.1038/ncomms7116.

15.

Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin.

Walinda E, Morimoto D, Sugase K, Konuma T, Tochio H, Shirakawa M.

J Biol Chem. 2014 May 16;289(20):13890-902. doi: 10.1074/jbc.M114.555441. Epub 2014 Apr 1.

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