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Items: 1 to 20 of 33


'Genome skimming' with the MinION hand-held sequencer identifies CITES-listed shark species in India's exports market.

Johri S, Solanki J, Cantu VA, Fellows SR, Edwards RA, Moreno I, Vyas A, Dinsdale EA.

Sci Rep. 2019 Mar 14;9(1):4476. doi: 10.1038/s41598-019-40940-9.


Rhodoliths holobionts in a changing ocean: host-microbes interactions mediate coralline algae resilience under ocean acidification.

Cavalcanti GS, Shukla P, Morris M, Ribeiro B, Foley M, Doane MP, Thompson CC, Edwards MS, Dinsdale EA, Thompson FL.

BMC Genomics. 2018 Sep 24;19(1):701. doi: 10.1186/s12864-018-5064-4.


Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption.

Minich JJ, Morris MM, Brown M, Doane M, Edwards MS, Michael TP, Dinsdale EA.

PLoS One. 2018 Feb 23;13(2):e0192772. doi: 10.1371/journal.pone.0192772. eCollection 2018.


Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.

Papudeshi B, Haggerty JM, Doane M, Morris MM, Walsh K, Beattie DT, Pande D, Zaeri P, Silva GGZ, Thompson F, Edwards RA, Dinsdale EA.

BMC Genomics. 2017 Nov 28;18(1):915. doi: 10.1186/s12864-017-4294-1.


Aura-biomes are present in the water layer above coral reef benthic macro-organisms.

Walsh K, Haggerty JM, Doane MP, Hansen JJ, Morris MM, Moreira APB, de Oliveira L, Leomil L, Garcia GD, Thompson F, Dinsdale EA.

PeerJ. 2017 Aug 15;5:e3666. doi: 10.7717/peerj.3666. eCollection 2017.


Bacterial Community Associated with the Reef Coral Mussismilia braziliensis's Momentum Boundary Layer over a Diel Cycle.

Silveira CB, Gregoracci GB, Coutinho FH, Silva GGZ, Haggerty JM, de Oliveira LS, Cabral AS, Rezende CE, Thompson CC, Francini-Filho RB, Edwards RA, Dinsdale EA, Thompson FL.

Front Microbiol. 2017 May 22;8:784. doi: 10.3389/fmicb.2017.00784. eCollection 2017.


Microbial processes driving coral reef organic carbon flow.

Silveira CB, Cavalcanti GS, Walter JM, Silva-Lima AW, Dinsdale EA, Bourne DG, Thompson CC, Thompson FL.

FEMS Microbiol Rev. 2017 Jul 1;41(4):575-595. doi: 10.1093/femsre/fux018.


The skin microbiome of the common thresher shark (Alopias vulpinus) has low taxonomic and gene function β-diversity.

Doane MP, Haggerty JM, Kacev D, Papudeshi B, Dinsdale EA.

Environ Microbiol Rep. 2017 Aug;9(4):357-373. doi: 10.1111/1758-2229.12537. Epub 2017 Jun 27.


Nearshore Pelagic Microbial Community Abundance Affects Recruitment Success of Giant Kelp, Macrocystis pyrifera.

Morris MM, Haggerty JM, Papudeshi BN, Vega AA, Edwards MS, Dinsdale EA.

Front Microbiol. 2016 Nov 14;7:1800. eCollection 2016.


Global microbialization of coral reefs.

Haas AF, Fairoz MF, Kelly LW, Nelson CE, Dinsdale EA, Edwards RA, Giles S, Hatay M, Hisakawa N, Knowles B, Lim YW, Maughan H, Pantos O, Roach TN, Sanchez SE, Silveira CB, Sandin S, Smith JE, Rohwer F.

Nat Microbiol. 2016 Apr 25;1(6):16042. doi: 10.1038/nmicrobiol.2016.42.


Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and Gallinarum.

Matthews TD, Schmieder R, Silva GG, Busch J, Cassman N, Dutilh BE, Green D, Matlock B, Heffernan B, Olsen GJ, Farris Hanna L, Schifferli DM, Maloy S, Dinsdale EA, Edwards RA.

PLoS One. 2015 Jun 3;10(6):e0126883. doi: 10.1371/journal.pone.0126883. eCollection 2015.


Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition.

Lim YW, Cuevas DA, Silva GG, Aguinaldo K, Dinsdale EA, Haas AF, Hatay M, Sanchez SE, Wegley-Kelly L, Dutilh BE, Harkins TT, Lee CC, Tom W, Sandin SA, Smith JE, Zgliczynski B, Vermeij MJ, Rohwer F, Edwards RA.

PeerJ. 2014 Aug 19;2:e520. doi: 10.7717/peerj.520. eCollection 2014.


Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions.

Dutilh BE, Thompson CC, Vicente AC, Marin MA, Lee C, Silva GG, Schmieder R, Andrade BG, Chimetto L, Cuevas D, Garza DR, Okeke IN, Aboderin AO, Spangler J, Ross T, Dinsdale EA, Thompson FL, Harkins TT, Edwards RA.

BMC Genomics. 2014 Aug 5;15:654. doi: 10.1186/1471-2164-15-654.


A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes.

Dutilh BE, Cassman N, McNair K, Sanchez SE, Silva GG, Boling L, Barr JJ, Speth DR, Seguritan V, Aziz RK, Felts B, Dinsdale EA, Mokili JL, Edwards RA.

Nat Commun. 2014 Jul 24;5:4498. doi: 10.1038/ncomms5498.


Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors.

Kelly LW, Williams GJ, Barott KL, Carlson CA, Dinsdale EA, Edwards RA, Haas AF, Haynes M, Lim YW, McDole T, Nelson CE, Sala E, Sandin SA, Smith JE, Vermeij MJ, Youle M, Rohwer F.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10227-32. doi: 10.1073/pnas.1403319111. Epub 2014 Jun 30.


Combining de novo and reference-guided assembly with scaffold_builder.

Silva GG, Dutilh BE, Matthews TD, Elkins K, Schmieder R, Dinsdale EA, Edwards RA.

Source Code Biol Med. 2013 Nov 22;8(1):23. doi: 10.1186/1751-0473-8-23.


Draft Genome Sequence of the Fish Pathogen Piscirickettsia salmonis.

Eppinger M, McNair K, Zogaj X, Dinsdale EA, Edwards RA, Klose KE.

Genome Announc. 2013 Nov 7;1(6). pii: e00926-13. doi: 10.1128/genomeA.00926-13.


Metagenomic insights into anaerobic metabolism along an Arctic peat soil profile.

Lipson DA, Haggerty JM, Srinivas A, Raab TK, Sathe S, Dinsdale EA.

PLoS One. 2013 May 31;8(5):e64659. doi: 10.1371/journal.pone.0064659. Print 2013.


Multivariate analysis of functional metagenomes.

Dinsdale EA, Edwards RA, Bailey BA, Tuba I, Akhter S, McNair K, Schmieder R, Apkarian N, Creek M, Guan E, Hernandez M, Isaacs K, Peterson C, Regh T, Ponomarenko V.

Front Genet. 2013 Apr 2;4:41. doi: 10.3389/fgene.2013.00041. eCollection 2013.


Oxygen minimum zones harbour novel viral communities with low diversity.

Cassman N, Prieto-Davó A, Walsh K, Silva GG, Angly F, Akhter S, Barott K, Busch J, McDole T, Haggerty JM, Willner D, Alarcón G, Ulloa O, DeLong EF, Dutilh BE, Rohwer F, Dinsdale EA.

Environ Microbiol. 2012 Nov;14(11):3043-65. doi: 10.1111/j.1462-2920.2012.02891.x. Epub 2012 Oct 5.


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