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Items: 1 to 20 of 29

1.

Identification of unusual peptides with new Cys frameworks in the venom of the cold-water sea anemone Cnidopus japonicus.

Babenko VV, Mikov AN, Manuvera VA, Anikanov NA, Kovalchuk SI, Andreev YA, Logashina YA, Kornilov DA, Manolov AI, Sanamyan NP, Sanamyan KE, Kostryukova ES, Kozlov SA, Grishin EV, Govorun VM, Lazarev VN.

Sci Rep. 2017 Nov 6;7(1):14534. doi: 10.1038/s41598-017-14961-1.

2.

MetaCherchant: analyzing genomic context of antibiotic resistance genes in gut microbiota.

Olekhnovich EI, Vasilyev AT, Ulyantsev VI, Kostryukova ES, Tyakht AV.

Bioinformatics. 2017 Oct 28. doi: 10.1093/bioinformatics/btx681. [Epub ahead of print]

PMID:
29092015
3.

Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease.

Dubinkina VB, Tyakht AV, Odintsova VY, Yarygin KS, Kovarsky BA, Pavlenko AV, Ischenko DS, Popenko AS, Alexeev DG, Taraskina AY, Nasyrova RF, Krupitsky EM, Shalikiani NV, Bakulin IG, Shcherbakov PL, Skorodumova LO, Larin AK, Kostryukova ES, Abdulkhakov RA, Abdulkhakov SR, Malanin SY, Ismagilova RK, Grigoryeva TV, Ilina EN, Govorun VM.

Microbiome. 2017 Oct 17;5(1):141. doi: 10.1186/s40168-017-0359-2.

4.

Genome analysis of E. coli isolated from Crohn's disease patients.

Rakitina DV, Manolov AI, Kanygina AV, Garushyants SK, Baikova JP, Alexeev DG, Ladygina VG, Kostryukova ES, Larin AK, Semashko TA, Karpova IY, Babenko VV, Ismagilova RK, Malanin SY, Gelfand MS, Ilina EN, Gorodnichev RB, Lisitsyna ES, Aleshkin GI, Scherbakov PL, Khalif IL, Shapina MV, Maev IV, Andreev DN, Govorun VM.

BMC Genomics. 2017 Jul 19;18(1):544. doi: 10.1186/s12864-017-3917-x.

5.

Novel RNA biomarkers of prostate cancer revealed by RNA-seq analysis of formalin-fixed samples obtained from Russian patients.

Nikitina AS, Sharova EI, Danilenko SA, Butusova TB, Vasiliev AO, Govorov AV, Prilepskaya EA, Pushkar DY, Kostryukova ES.

Oncotarget. 2017 May 16;8(20):32990-33001. doi: 10.18632/oncotarget.16518.

6.

Microfluidic droplet platform for ultrahigh-throughput single-cell screening of biodiversity.

Terekhov SS, Smirnov IV, Stepanova AV, Bobik TV, Mokrushina YA, Ponomarenko NA, Belogurov AA Jr, Rubtsova MP, Kartseva OV, Gomzikova MO, Moskovtsev AA, Bukatin AS, Dubina MV, Kostryukova ES, Babenko VV, Vakhitova MT, Manolov AI, Malakhova MV, Kornienko MA, Tyakht AV, Vanyushkina AA, Ilina EN, Masson P, Gabibov AG, Altman S.

Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):2550-2555. doi: 10.1073/pnas.1621226114. Epub 2017 Feb 15.

7.

Data on gut metagenomes of the patients with alcoholic dependence syndrome and alcoholic liver cirrhosis.

Tyakht AV, Dubinkina VB, Odintsova VY, Yarygin KS, Kovarsky BA, Pavlenko AV, Ischenko DS, Popenko AS, Alexeev DG, Taraskina AY, Nasyrova RF, Krupitski EM, Shalikiani NV, Bakulin IG, Shcherbakov PL, Skorodumova LO, Larin AK, Kostryukova ES, Abdulkhakov RA, Abdulkhakov SR, Malanin SY, Ismagilova RK, Grigoryeva TV, Ilina EN, Govorun VM.

Data Brief. 2017 Jan 17;11:98-102. doi: 10.1016/j.dib.2017.01.008. eCollection 2017 Apr.

8.

Data on gut metagenomes of the patients with Helicobacter pylori infection before and after the antibiotic therapy.

Glushchenko OE, Samoilov AE, Olekhnovich EI, Kovarsky BA, Tyakht AV, Pavlenko AV, Babenko VV, Larin AK, Kostryukova ES, Malakhova MV, Ilina EN, Abdulkhakov RA, Safina DI, Grigoryeva TV, Abdulkhakov SR, Govorun VM.

Data Brief. 2017 Jan 17;11:68-71. doi: 10.1016/j.dib.2017.01.007. eCollection 2017 Apr.

9.

Application of sorting and next generation sequencing to study 5΄-UTR influence on translation efficiency in Escherichia coli.

Evfratov SA, Osterman IA, Komarova ES, Pogorelskaya AM, Rubtsova MP, Zatsepin TS, Semashko TA, Kostryukova ES, Mironov AA, Burnaev E, Krymova E, Gelfand MS, Govorun VM, Bogdanov AA, Sergiev PV, Dontsova OA.

Nucleic Acids Res. 2017 Apr 7;45(6):3487-3502. doi: 10.1093/nar/gkw1141.

10.

Correction for Sotnikova et al., Complete Genome Sequence of Mycobacterium bovis Strain BCG-1 (Russia).

Sotnikova EA, Shitikov EA, Malakhova MV, Babenko VV, Kostryukova ES, Ilina EN, Atrasheuskaya AV, Ignatyev GM, Vinokurova NV, Gorbachyov VY.

Genome Announc. 2016 Jun 2;4(3). pii: e00535-16. doi: 10.1128/genomeA.00535-16. No abstract available.

11.

Complete Genome Sequence of Mycobacterium bovis Strain BCG-1 (Russia).

Sotnikova EA, Shitikov EA, Malakhova MV, Kostryukova ES, Ilina EN, Atrasheuskaya AV, Ignatyev GM, Vinokurova NV, Gorbachyov VY.

Genome Announc. 2016 Mar 31;4(2). pii: e00182-16. doi: 10.1128/genomeA.00182-16. Erratum in: Genome Announc. 2016;4(3). pii: e00535-16. doi: 10.1128/genomeA.00535-16.

12.

No Evidence of a Common DNA Variant Profile Specific to World Class Endurance Athletes.

Rankinen T, Fuku N, Wolfarth B, Wang G, Sarzynski MA, Alexeev DG, Ahmetov II, Boulay MR, Cieszczyk P, Eynon N, Filipenko ML, Garton FC, Generozov EV, Govorun VM, Houweling PJ, Kawahara T, Kostryukova ES, Kulemin NA, Larin AK, Maciejewska-Karłowska A, Miyachi M, Muniesa CA, Murakami H, Ospanova EA, Padmanabhan S, Pavlenko AV, Pyankova ON, Santiago C, Sawczuk M, Scott RA, Uyba VV, Yvert T, Perusse L, Ghosh S, Rauramaa R, North KN, Lucia A, Pitsiladis Y, Bouchard C.

PLoS One. 2016 Jan 29;11(1):e0147330. doi: 10.1371/journal.pone.0147330. eCollection 2016.

13.

Branched Lateral Tail Fiber Organization in T5-Like Bacteriophages DT57C and DT571/2 is Revealed by Genetic and Functional Analysis.

Golomidova AK, Kulikov EE, Prokhorov NS, Guerrero-Ferreira RС, Knirel YA, Kostryukova ES, Tarasyan KK, Letarov AV.

Viruses. 2016 Jan 21;8(1). pii: E26. doi: 10.3390/v8010026.

14.

Athlome Project Consortium: a concerted effort to discover genomic and other "omic" markers of athletic performance.

Pitsiladis YP, Tanaka M, Eynon N, Bouchard C, North KN, Williams AG, Collins M, Moran CN, Britton SL, Fuku N, Ashley EA, Klissouras V, Lucia A, Ahmetov II, de Geus E, Alsayrafi M; Athlome Project Consortium.

Physiol Genomics. 2016 Mar;48(3):183-90. doi: 10.1152/physiolgenomics.00105.2015. Epub 2015 Dec 29. Review.

15.

Complete Genome Sequence of an Enterotoxigenic Bacteroides fragilis Clinical Isolate.

Nikitina AS, Kharlampieva DD, Babenko VV, Shirokov DA, Vakhitova MT, Manolov AI, Shkoporov AN, Taraskina AE, Manuvera VA, Lazarev VN, Kostryukova ES.

Genome Announc. 2015 May 7;3(3). pii: e00450-15. doi: 10.1128/genomeA.00450-15.

16.

Specific pools of endogenous peptides are present in gametophore, protonema, and protoplast cells of the moss Physcomitrella patens.

Fesenko IA, Arapidi GP, Skripnikov AY, Alexeev DG, Kostryukova ES, Manolov AI, Altukhov IA, Khazigaleeva RA, Seredina AV, Kovalchuk SI, Ziganshin RH, Zgoda VG, Novikova SE, Semashko TA, Slizhikova DK, Ptushenko VV, Gorbachev AY, Govorun VM, Ivanov VT.

BMC Plant Biol. 2015 Mar 15;15:87. doi: 10.1186/s12870-015-0468-7.

17.

Structure of the capsular polysaccharide of Acinetobacter baumannii 1053 having the KL91 capsule biosynthesis gene locus.

Shashkov AS, Shneider MM, Senchenkova SN, Popova AV, Nikitina AS, Babenko VV, Kostryukova ES, Miroshnikov KA, Volozhantsev NV, Knirel YA.

Carbohydr Res. 2015 Mar 2;404:79-82. doi: 10.1016/j.carres.2014.11.013. Epub 2014 Nov 29.

PMID:
25665782
18.

Isolation of single Chlamydia-infected cells using laser microdissection.

Podgorny OV, Polina NF, Babenko VV, Karpova IY, Kostryukova ES, Govorun VM, Lazarev VN.

J Microbiol Methods. 2015 Feb;109:123-8. doi: 10.1016/j.mimet.2014.12.018. Epub 2014 Dec 26.

PMID:
25546842
19.

Genomic sequencing and biological characteristics of a novel Escherichia coli bacteriophage 9g, a putative representative of a new Siphoviridae genus.

Kulikov EE, Golomidova AK, Letarova MA, Kostryukova ES, Zelenin AS, Prokhorov NS, Letarov AV.

Viruses. 2014 Dec 19;6(12):5077-92. doi: 10.3390/v6125077.

20.

Variations in O-antigen biosynthesis and O-acetylation associated with altered phage sensitivity in Escherichia coli 4s.

Knirel YA, Prokhorov NS, Shashkov AS, Ovchinnikova OG, Zdorovenko EL, Liu B, Kostryukova ES, Larin AK, Golomidova AK, Letarov AV.

J Bacteriol. 2015 Mar;197(5):905-12. doi: 10.1128/JB.02398-14. Epub 2014 Dec 15.

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