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Items: 1 to 20 of 436


Fogarty International Center collaborative networks in infectious disease modeling: Lessons learnt in research and capacity building.

Nelson MI, Lloyd-Smith JO, Simonsen L, Rambaut A, Holmes EC, Chowell G, Miller MA, Spiro DJ, Grenfell B, Viboud C.

Epidemics. 2018 Oct 23. pii: S1755-4365(18)30029-X. doi: 10.1016/j.epidem.2018.10.004. [Epub ahead of print] Review.


Extensive Diversity of RNA Viruses in Australian Ticks.

Harvey E, Rose K, Eden JS, Lo N, Abeyasuriya T, Shi M, Doggett SL, Holmes EC.

J Virol. 2018 Nov 7. pii: JVI.01358-18. doi: 10.1128/JVI.01358-18. [Epub ahead of print]


Hidden diversity and evolution of viruses in market fish.

Geoghegan JL, Di Giallonardo F, Cousins K, Shi M, Williamson JE, Holmes EC.

Virus Evol. 2018 Oct 31;4(2):vey031. doi: 10.1093/ve/vey031. eCollection 2018 Jul.


Virus-virus interactions and host ecology are associated with RNA virome structure in wild birds.

Wille M, Eden JS, Shi M, Klaassen M, Hurt AC, Holmes EC.

Mol Ecol. 2018 Oct 29. doi: 10.1111/mec.14918. [Epub ahead of print]


The phylogenomics of evolving virus virulence.

Geoghegan JL, Holmes EC.

Nat Rev Genet. 2018 Dec;19(12):756-769. doi: 10.1038/s41576-018-0055-5. Review.


An Atypical Parvovirus Drives Chronic Tubulointerstitial Nephropathy and Kidney Fibrosis.

Roediger B, Lee Q, Tikoo S, Cobbin JCA, Henderson JM, Jormakka M, O'Rourke MB, Padula MP, Pinello N, Henry M, Wynne M, Santagostino SF, Brayton CF, Rasmussen L, Lisowski L, Tay SS, Harris DC, Bertram JF, Dowling JP, Bertolino P, Lai JH, Wu W, Bachovchin WW, Wong JJ, Gorrell MD, Shaban B, Holmes EC, Jolly CJ, Monette S, Weninger W.

Cell. 2018 Oct 4;175(2):530-543.e24. doi: 10.1016/j.cell.2018.08.013. Epub 2018 Sep 13.


Evolution of Human Respiratory Syncytial Virus (RSV) over Multiple Seasons in New South Wales, Australia.

Di Giallonardo F, Kok J, Fernandez M, Carter I, Geoghegan JL, Dwyer DE, Holmes EC, Eden JS.

Viruses. 2018 Sep 6;10(9). pii: E476. doi: 10.3390/v10090476.


Transcriptome Analysis and In Situ Hybridization for FcaGHV1 in Feline Lymphoma.

Aghazadeh M, Shi M, Pesavento PA, Durham AC, Polley T, Donahoe SL, Troyer RM, Barrs VR, Holmes EC, Beatty JA.

Viruses. 2018 Aug 30;10(9). pii: E464. doi: 10.3390/v10090464.


The diversity, evolution and origins of vertebrate RNA viruses.

Zhang YZ, Wu WC, Shi M, Holmes EC.

Curr Opin Virol. 2018 Aug;31:9-16. doi: 10.1016/j.coviro.2018.07.017. Epub 2018 Aug 13. Review.


Draft genome assembly of the invasive cane toad, Rhinella marina.

Edwards RJ, Tuipulotu DE, Amos TG, O'Meally D, Richardson MF, Russell TL, Vallinoto M, Carneiro M, Ferrand N, Wilkins MR, Sequeira F, Rollins LA, Holmes EC, Shine R, White PA.

Gigascience. 2018 Sep 1;7(9). doi: 10.1093/gigascience/giy095.


A Simple Method to Detect Candidate Overlapping Genes in Viruses Using Single Genome Sequences.

Schlub TE, Buchmann JP, Holmes EC.

Mol Biol Evol. 2018 Oct 1;35(10):2572-2581. doi: 10.1093/molbev/msy155.


No detectable effect of Wolbachia wMel on the prevalence and abundance of the RNA virome of Drosophila melanogaster.

Shi M, White VL, Schlub T, Eden JS, Hoffmann AA, Holmes EC.

Proc Biol Sci. 2018 Jul 25;285(1883). pii: 20181165. doi: 10.1098/rspb.2018.1165.


Low evolutionary rate of infectious pancreatic necrosis virus (IPNV) in Italy is associated with reduced virulence in trout.

Panzarin V, Holmes EC, Abbadi M, Zamperin G, Quartesan R, Milani A, Schivo A, Bille L, Dalla Pozza M, Monne I, Toffan A.

Virus Evol. 2018 Jul 18;4(2):vey019. doi: 10.1093/ve/vey019. eCollection 2018 Jul.


A complex mosaic of enteroviruses shapes community-acquired hand, foot and mouth disease transmission and evolution within a single hospital.

Cobbin JCA, Britton PN, Burrell R, Thosar D, Selvakumar K, Eden JS, Jones CA, Holmes EC.

Virus Evol. 2018 Jul 13;4(2):vey020. doi: 10.1093/ve/vey020. eCollection 2018 Jul.


Author Correction: The evolutionary history of vertebrate RNA viruses.

Shi M, Lin XD, Chen X, Tian JH, Chen LJ, Li K, Wang W, Eden JS, Shen JJ, Liu L, Holmes EC, Zhang YZ.

Nature. 2018 Sep;561(7722):E6. doi: 10.1038/s41586-018-0310-0.


The Biological Object Notation (BON): a structured file format for biological data.

Buchmann JP, Fourment M, Holmes EC.

Sci Rep. 2018 Jun 25;8(1):9644. doi: 10.1038/s41598-018-28016-6.


Viral Discovery in the Invasive Australian Cane Toad (Rhinella marina) Using Metatranscriptomic and Genomic Approaches.

Russo AG, Eden JS, Enosi Tuipulotu D, Shi M, Selechnik D, Shine R, Rollins LA, Holmes EC, White PA.

J Virol. 2018 Aug 16;92(17). pii: e00768-18. doi: 10.1128/JVI.00768-18. Print 2018 Sep 1.


Pandemics: spend on surveillance, not prediction.

Holmes EC, Rambaut A, Andersen KG.

Nature. 2018 Jun;558(7709):180-182. doi: 10.1038/d41586-018-05373-w. No abstract available.


Multiple Incursions and Recurrent Epidemic Fade-Out of H3N2 Canine Influenza A Virus in the United States.

Voorhees IEH, Dalziel BD, Glaser A, Dubovi EJ, Murcia PR, Newbury S, Toohey-Kurth K, Su S, Kriti D, Van Bakel H, Goodman LB, Leutenegger C, Holmes EC, Parrish CR.

J Virol. 2018 Jul 31;92(16). pii: e00323-18. doi: 10.1128/JVI.00323-18. Print 2018 Aug 15.


Virological Sampling of Inaccessible Wildlife with Drones.

Geoghegan JL, Pirotta V, Harvey E, Smith A, Buchmann JP, Ostrowski M, Eden JS, Harcourt R, Holmes EC.

Viruses. 2018 Jun 2;10(6). pii: E300. doi: 10.3390/v10060300.

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