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Items: 1 to 20 of 422

1.

Author Correction: The evolutionary history of vertebrate RNA viruses.

Shi M, Lin XD, Chen X, Tian JH, Chen LJ, Li K, Wang W, Eden JS, Shen JJ, Liu L, Holmes EC, Zhang YZ.

Nature. 2018 Jun 26. doi: 10.1038/s41586-018-0310-0. [Epub ahead of print]

PMID:
29946168
2.

The Biological Object Notation (BON): a structured file format for biological data.

Buchmann JP, Fourment M, Holmes EC.

Sci Rep. 2018 Jun 25;8(1):9644. doi: 10.1038/s41598-018-28016-6.

3.

Viral discovery in the invasive Australian cane toad (Rhinella marina) using metatranscriptomic and genomic approaches.

Russo AG, Eden JS, Enosi Tuipulotu D, Shi M, Selechnik D, Shine R, Rollins LA, Holmes EC, White PA.

J Virol. 2018 Jun 13. pii: JVI.00768-18. doi: 10.1128/JVI.00768-18. [Epub ahead of print]

PMID:
29899109
4.

Pandemics: spend on surveillance, not prediction.

Holmes EC, Rambaut A, Andersen KG.

Nature. 2018 Jun;558(7709):180-182. doi: 10.1038/d41586-018-05373-w. No abstract available.

PMID:
29880819
5.

Multiple incursions and recurrent epidemic fade-out of H3N2 canine influenza A virus in the United States.

Voorhees IEH, Dalziel BD, Glaser A, Dubovi EJ, Murcia PR, Newbury S, Toohey-Kurth K, Su S, Kriti D, Van Bakel H, Goodman LB, Leutenegger C, Holmes EC, Parrish CR.

J Virol. 2018 Jun 6. pii: JVI.00323-18. doi: 10.1128/JVI.00323-18. [Epub ahead of print]

PMID:
29875234
6.

Virological Sampling of Inaccessible Wildlife with Drones.

Geoghegan JL, Pirotta V, Harvey E, Smith A, Buchmann JP, Ostrowski M, Eden JS, Harcourt R, Holmes EC.

Viruses. 2018 Jun 2;10(6). pii: E300. doi: 10.3390/v10060300.

7.

A Novel Hepadnavirus Identified in an Immunocompromised Domestic Cat in Australia.

Aghazadeh M, Shi M, Barrs VR, McLuckie AJ, Lindsay SA, Jameson B, Hampson B, Holmes EC, Beatty JA.

Viruses. 2018 May 17;10(5). pii: E269. doi: 10.3390/v10050269.

8.

Publisher Correction: Sudden emergence of human infections with H7N9 avian influenza A virus in Hubei province, central China.

Liu J, Xu J, Liu L, Wei X, Song Y, Fang B, Yu X, Li X, Ye G, Du Y, Chen M, Shi W, Liu D, Holmes EC, Cui J.

Sci Rep. 2018 May 10;8(1):7588. doi: 10.1038/s41598-018-25257-3.

9.

Complete genome of Aedes aegypti anphevirus in the Aag2 mosquito cell line.

Di Giallonardo F, Audsley MD, Shi M, Young PR, McGraw EA, Holmes EC.

J Gen Virol. 2018 Jun;99(6):832-836. doi: 10.1099/jgv.0.001079. Epub 2018 May 9.

PMID:
29741476
10.

The evolutionary history of vertebrate RNA viruses.

Shi M, Lin XD, Chen X, Tian JH, Chen LJ, Li K, Wang W, Eden JS, Shen JJ, Liu L, Holmes EC, Zhang YZ.

Nature. 2018 Apr;556(7700):197-202. doi: 10.1038/s41586-018-0012-7. Epub 2018 Apr 4. Erratum in: Nature. 2018 Jun 26;:.

PMID:
29618816
11.

Using Metagenomics to Characterize an Expanding Virosphere.

Zhang YZ, Shi M, Holmes EC.

Cell. 2018 Mar 8;172(6):1168-1172. doi: 10.1016/j.cell.2018.02.043.

PMID:
29522738
12.

Estimating evolutionary rates in giant viruses using ancient genomes.

Duchêne S, Holmes EC.

Virus Evol. 2018 Feb 27;4(1):vey006. doi: 10.1093/ve/vey006. eCollection 2018 Jan.

13.

A Single Amino Acid Change in the Response Regulator PhoP, Acquired during Yersinia pestis Evolution, Affects PhoP Target Gene Transcription and Polymyxin B Susceptibility.

Fukuto HS, Vadyvaloo V, McPhee JB, Poinar HN, Holmes EC, Bliska JB.

J Bacteriol. 2018 Apr 9;200(9). pii: e00050-18. doi: 10.1128/JB.00050-18. Print 2018 May 1.

PMID:
29440252
14.

Correction: The paradox of HBV evolution as revealed from a 16th century mummy.

Patterson Ross Z, Klunk J, Fornaciari G, Giuffra V, Duchêne S, Duggan AT, Poinar D, Douglas MW, Eden JS, Holmes EC, Poinar HN.

PLoS Pathog. 2018 Feb 9;14(2):e1006887. doi: 10.1371/journal.ppat.1006887. eCollection 2018 Feb.

15.

Correction: Continental synchronicity of human influenza virus epidemics despite climactic variation.

Geoghegan JL, Saavedra AF, Duchêne S, Sullivan S, Barr I, Holmes EC.

PLoS Pathog. 2018 Feb 7;14(2):e1006903. doi: 10.1371/journal.ppat.1006903. eCollection 2018 Feb.

16.

Sudden emergence of human infections with H7N9 avian influenza A virus in Hubei province, central China.

Liu J, Xu J, Liu L, Wei X, Song Y, Fang B, Yu X, Li X, Ye G, Du Y, Chen M, Shi W, Liu D, Holmes EC, Cui J.

Sci Rep. 2018 Feb 6;8(1):2486. doi: 10.1038/s41598-018-20988-9. Erratum in: Sci Rep. 2018 May 10;8(1):7588.

17.

Interplay between co-divergence and cross-species transmission in the evolutionary history of bat coronaviruses.

Leopardi S, Holmes EC, Gastaldelli M, Tassoni L, Priori P, Scaravelli D, Zamperin G, De Benedictis P.

Infect Genet Evol. 2018 Mar;58:279-289. doi: 10.1016/j.meegid.2018.01.012. Epub 2018 Jan 30.

PMID:
29355607
18.

Continental synchronicity of human influenza virus epidemics despite climatic variation.

Geoghegan JL, Saavedra AF, Duchêne S, Sullivan S, Barr I, Holmes EC.

PLoS Pathog. 2018 Jan 11;14(1):e1006780. doi: 10.1371/journal.ppat.1006780. eCollection 2018 Jan. Erratum in: PLoS Pathog. 2018 Feb 7;14 (2):e1006903.

19.

The paradox of HBV evolution as revealed from a 16th century mummy.

Patterson Ross Z, Klunk J, Fornaciari G, Giuffra V, Duchêne S, Duggan AT, Poinar D, Douglas MW, Eden JS, Holmes EC, Poinar HN.

PLoS Pathog. 2018 Jan 4;14(1):e1006750. doi: 10.1371/journal.ppat.1006750. eCollection 2018 Jan. Erratum in: PLoS Pathog. 2018 Feb 9;14 (2):e1006887.

20.

Detection and Circulation of a Novel Rabbit Hemorrhagic Disease Virus in Australia.

Mahar JE, Read AJ, Gu X, Urakova N, Mourant R, Piper M, Haboury S, Holmes EC, Strive T, Hall RN.

Emerg Infect Dis. 2018 Jan;24(1):22-31. doi: 10.3201/eid2401.170412.

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