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Items: 1 to 20 of 465

1.

Epidemiology and Diversity of Rickettsiales Bacteria in Humans and Animals in Jiangsu and Jiangxi provinces, China.

Lu M, Li F, Liao Y, Shen JJ, Xu JM, Chen YZ, Li JH, Holmes EC, Zhang YZ.

Sci Rep. 2019 Sep 11;9(1):13176. doi: 10.1038/s41598-019-49059-3.

2.

Influenza Viruses in Mice: Deep Sequencing Analysis of Serial Passage and Effects of Sialic Acid Structural Variation.

Wasik BR, Voorhees IEH, Barnard KN, Alford-Lawrence BK, Weichert WS, Hood G, Nogales A, Martínez-Sobrido L, Holmes EC, Parrish CR.

J Virol. 2019 Sep 11. pii: JVI.01039-19. doi: 10.1128/JVI.01039-19. [Epub ahead of print]

PMID:
31511393
3.

Meta-transcriptomic identification of hepatitis B virus in cerebrospinal fluid in patients with central nervous system disease.

Pettersson JH, Piorkowski G, Mayxay M, Rattanavong S, Vongsouvath M, Davong V, Alfsnes K, Eldholm V, de Lamballerie X, Holmes EC, Newton PN, Dubot-Pérès A.

Diagn Microbiol Infect Dis. 2019 Aug 1:114878. doi: 10.1016/j.diagmicrobio.2019.114878. [Epub ahead of print]

PMID:
31451314
4.

Reply to 'Reconciling disparate estimates of viral genetic diversity during human influenza infections'.

Poon LLM, Song T, Wentworth DE, Holmes EC, Greenbaum BD, Peiris JSM, Cowling BJ, Ghedin E.

Nat Genet. 2019 Sep;51(9):1301-1303. doi: 10.1038/s41588-019-0486-8. No abstract available.

PMID:
31406345
5.

Identification of a Novel Equine Papillomavirus in Semen from a Thoroughbred Stallion with a Penile Lesion.

Li CX, Chang WS, Mitsakos K, Rodger J, Holmes EC, Hudson BJ.

Viruses. 2019 Aug 4;11(8). pii: E713. doi: 10.3390/v11080713.

6.

Co-circulation and persistence of multiple A/H3N2 influenza variants in China.

Shi W, Ke C, Fang S, Li J, Song H, Li X, Hu T, Wu J, Chen T, Yi L, Song Y, Wang X, Xing W, Huang W, Xiao H, Liang L, Peng B, Wu W, Liu H, Liu WJ, Holmes EC, Gao GF, Wang D.

Emerg Microbes Infect. 2019;8(1):1157-1167. doi: 10.1080/22221751.2019.1648183.

7.

Novel hepatitis D-like agents in vertebrates and invertebrates.

Chang WS, Pettersson JH, Le Lay C, Shi M, Lo N, Wille M, Eden JS, Holmes EC.

Virus Evol. 2019 Jul 15;5(2):vez021. doi: 10.1093/ve/vez021. eCollection 2019 Jul.

8.

Identification of diverse arthropod associated viruses in native Australian fleas.

Harvey E, Rose K, Eden JS, Lawrence A, Doggett SL, Holmes EC.

Virology. 2019 Jul 9;535:189-199. doi: 10.1016/j.virol.2019.07.010. [Epub ahead of print]

PMID:
31319276
9.

Evolutionary history of Simbu serogroup orthobunyaviruses in the Australian episystem.

Wang J, Firth C, Amos-Ritchie R, Davis SS, Yin H, Holmes EC, Blasdell KR, Walker PJ.

Virology. 2019 Jun 26;535:32-44. doi: 10.1016/j.virol.2019.06.013. [Epub ahead of print]

10.

Virome heterogeneity and connectivity in waterfowl and shorebird communities.

Wille M, Shi M, Klaassen M, Hurt AC, Holmes EC.

ISME J. 2019 Jun 25. doi: 10.1038/s41396-019-0458-0. [Epub ahead of print]

PMID:
31239538
11.

Comparison of intra- and inter-host genetic diversity in rabies virus during experimental cross-species transmission.

Bonnaud EM, Troupin C, Dacheux L, Holmes EC, Monchatre-Leroy E, Tanguy M, Bouchier C, Cliquet F, Barrat J, Bourhy H.

PLoS Pathog. 2019 Jun 20;15(6):e1007799. doi: 10.1371/journal.ppat.1007799. eCollection 2019 Jun.

12.

Sustained Wolbachia-mediated blocking of dengue virus isolates following serial passage in Aedes aegypti cell culture.

Koh C, Audsley MD, Di Giallonardo F, Kerton EJ, Young PR, Holmes EC, McGraw EA.

Virus Evol. 2019 Jun 8;5(1):vez012. doi: 10.1093/ve/vez012. eCollection 2019 Jan.

13.

Limited Sustained Local Transmission of HIV-1 CRF01_AE in New South Wales, Australia.

Di Giallonardo F, Pinto AN, Keen P, Shaik A, Carrera A, Salem H, Telfer B, Cooper C, Price K, Selvey C, Holden J, Bachmann N, Lee FJ, Dwyer DE, Duchêne S, Holmes EC, Grulich AE, Kelleher AD.

Viruses. 2019 May 27;11(5). pii: E482. doi: 10.3390/v11050482.

14.

Expanding the RNA Virosphere by Unbiased Metagenomics.

Zhang YZ, Chen YM, Wang W, Qin XC, Holmes EC.

Annu Rev Virol. 2019 May 17. doi: 10.1146/annurev-virology-092818-015851. [Epub ahead of print]

PMID:
31100994
15.

Entrezpy: A Python library to dynamically interact with the NCBI Entrez databases.

Buchmann JP, Holmes EC.

Bioinformatics. 2019 May 11. pii: btz385. doi: 10.1093/bioinformatics/btz385. [Epub ahead of print]

PMID:
31077305
16.

The discovery of three new hare lagoviruses reveals unexplored viral diversity in this genus.

Mahar JE, Hall RN, Shi M, Mourant R, Huang N, Strive T, Holmes EC.

Virus Evol. 2019 Apr 9;5(1):vez005. doi: 10.1093/ve/vez005. eCollection 2019 Jan.

17.

Can Sequence Phylogenies Safely Infer the Origin of the Global Virome?

Holmes EC, Duchêne S.

MBio. 2019 Apr 16;10(2). pii: e00289-19. doi: 10.1128/mBio.00289-19. No abstract available.

18.

Meta-transcriptomics reveals a diverse antibiotic resistance gene pool in avian microbiomes.

Marcelino VR, Wille M, Hurt AC, González-Acuña D, Klaassen M, Schlub TE, Eden JS, Shi M, Iredell JR, Sorrell TC, Holmes EC.

BMC Biol. 2019 Apr 8;17(1):31. doi: 10.1186/s12915-019-0649-1.

19.

Discovery of a highly divergent hepadnavirus in shrews from China.

Nie FY, Tian JH, Lin XD, Yu B, Xing JG, Cao JH, Holmes EC, Ma RZ, Zhang YZ.

Virology. 2019 May;531:162-170. doi: 10.1016/j.virol.2019.03.007. Epub 2019 Mar 11.

PMID:
30884426
20.

Fecal Viral Diversity of Captive and Wild Tasmanian Devils Characterized Using Virion-Enriched Metagenomics and Metatranscriptomics.

Chong R, Shi M, Grueber CE, Holmes EC, Hogg CJ, Belov K, Barrs VR.

J Virol. 2019 May 15;93(11). pii: e00205-19. doi: 10.1128/JVI.00205-19. Print 2019 Jun 1.

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