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Items: 18

1.

Genome-Wide Signatures of Selection in Colletotrichum kahawae Reveal Candidate Genes Potentially Involved in Pathogenicity and Aggressiveness.

Vieira A, Silva DN, Várzea V, Paulo OS, Batista D.

Front Microbiol. 2019 Jun 19;10:1374. doi: 10.3389/fmicb.2019.01374. eCollection 2019.

2.

Novel insights on colonization routes and evolutionary potential of Colletotrichum kahawae, a severe pathogen of Coffea arabica.

Vieira A, Silva DN, Várzea V, Paulo OS, Batista D.

Mol Plant Pathol. 2018 Nov;19(11):2488-2501. doi: 10.1111/mpp.12726. Epub 2018 Oct 17.

PMID:
30073748
3.

Population genomic footprints of host adaptation, introgression and recombination in coffee leaf rust.

Silva DN, Várzea V, Paulo OS, Batista D.

Mol Plant Pathol. 2018 Jul;19(7):1742-1753. doi: 10.1111/mpp.12657. Epub 2018 Feb 22.

PMID:
29328532
4.

A first insight into the involvement of phytohormones pathways in coffee resistance and susceptibility to Colletotrichum kahawae.

Diniz I, Figueiredo A, Loureiro A, Batista D, Azinheira H, Várzea V, Pereira AP, Gichuru E, Moncada P, Guerra-Guimarães L, Oliveira H, Silva MDC.

PLoS One. 2017 May 19;12(5):e0178159. doi: 10.1371/journal.pone.0178159. eCollection 2017.

5.

Legitimacy and Implications of Reducing Colletotrichum kahawae to Subspecies in Plant Pathology.

Batista D, Silva DN, Vieira A, Cabral A, Pires AS, Loureiro A, Guerra-Guimarães L, Pereira AP, Azinheira H, Talhinhas P, Silva MD, Várzea V.

Front Plant Sci. 2017 Jan 9;7:2051. doi: 10.3389/fpls.2016.02051. eCollection 2016. No abstract available.

6.

The coffee leaf rust pathogen Hemileia vastatrix: one and a half centuries around the tropics.

Talhinhas P, Batista D, Diniz I, Vieira A, Silva DN, Loureiro A, Tavares S, Pereira AP, Azinheira HG, Guerra-Guimarães L, Várzea V, Silva MDC.

Mol Plant Pathol. 2017 Oct;18(8):1039-1051. doi: 10.1111/mpp.12512. Epub 2017 Jan 25. Review.

PMID:
27885775
7.

Evolutionary and Biogeographic Insights on the Macaronesian Beta-Patellifolia Species (Amaranthaceae) from a Time-Scaled Molecular Phylogeny.

Romeiras MM, Vieira A, Silva DN, Moura M, Santos-Guerra A, Batista D, Duarte MC, Paulo OS.

PLoS One. 2016 Mar 31;11(3):e0152456. doi: 10.1371/journal.pone.0152456. eCollection 2016.

8.

Comparative Validation of Conventional and RNA-Seq Data-Derived Reference Genes for qPCR Expression Studies of Colletotrichum kahawae.

Vieira A, Cabral A, Fino J, Azinheira HG, Loureiro A, Talhinhas P, Pires AS, Varzea V, Moncada P, Oliveira H, Silva Mdo C, Paulo OS, Batista D.

PLoS One. 2016 Mar 7;11(3):e0150651. doi: 10.1371/journal.pone.0150651. eCollection 2016.

9.

4Pipe4--A 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information.

Pina-Martins F, Vieira BM, Seabra SG, Batista D, Paulo OS.

BMC Bioinformatics. 2016 Jan 19;17:41. doi: 10.1186/s12859-016-0892-1.

10.

Genomic Patterns of Positive Selection at the Origin of Rust Fungi.

Silva DN, Duplessis S, Talhinhas P, Azinheira H, Paulo OS, Batista D.

PLoS One. 2015 Dec 3;10(12):e0143959. doi: 10.1371/journal.pone.0143959. eCollection 2015.

11.

Tracking cashew economically important diseases in the West African region using metagenomics.

Monteiro F, Romeiras MM, Figueiredo A, Sebastiana M, Baldé A, Catarino L, Batista D.

Front Plant Sci. 2015 Jun 30;6:482. doi: 10.3389/fpls.2015.00482. eCollection 2015.

12.

A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing.

Pereira-Leal JB, Abreu IA, Alabaça CS, Almeida MH, Almeida P, Almeida T, Amorim MI, Araújo S, Azevedo H, Badia A, Batista D, Bohn A, Capote T, Carrasquinho I, Chaves I, Coelho AC, Costa MM, Costa R, Cravador A, Egas C, Faro C, Fortes AM, Fortunato AS, Gaspar MJ, Gonçalves S, Graça J, Horta M, Inácio V, Leitão JM, Lino-Neto T, Marum L, Matos J, Mendonça D, Miguel A, Miguel CM, Morais-Cecílio L, Neves I, Nóbrega F, Oliveira MM, Oliveira R, Pais MS, Paiva JA, Paulo OS, Pinheiro M, Raimundo JA, Ramalho JC, Ribeiro AI, Ribeiro T, Rocheta M, Rodrigues AI, Rodrigues JC, Saibo NJ, Santo TE, Santos AM, Sá-Pereira P, Sebastiana M, Simões F, Sobral RS, Tavares R, Teixeira R, Varela C, Veloso MM, Ricardo CP.

BMC Genomics. 2014 May 15;15:371. doi: 10.1186/1471-2164-15-371.

13.

Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection.

Talhinhas P, Azinheira HG, Vieira B, Loureiro A, Tavares S, Batista D, Morin E, Petitot AS, Paulo OS, Poulain J, Da Silva C, Duplessis S, Silva Mdo C, Fernandez D.

Front Plant Sci. 2014 Mar 14;5:88. doi: 10.3389/fpls.2014.00088. eCollection 2014.

14.

Validation of reference genes for normalization of qPCR gene expression data from Coffea spp. hypocotyls inoculated with Colletotrichum kahawae.

Figueiredo A, Loureiro A, Batista D, Monteiro F, Várzea V, Pais MS, Gichuru EK, Silva MC.

BMC Res Notes. 2013 Sep 28;6:388. doi: 10.1186/1756-0500-6-388.

15.

Host-jump drives rapid and recent ecological speciation of the emergent fungal pathogen Colletotrichum kahawae.

Silva DN, Talhinhas P, Cai L, Manuel L, Gichuru EK, Loureiro A, Várzea V, Paulo OS, Batista D.

Mol Ecol. 2012 Jun;21(11):2655-70. doi: 10.1111/j.1365-294X.2012.05557.x. Epub 2012 Apr 23.

PMID:
22519519
16.

Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: an example from coffee (Coffea spp.) hosts.

Silva DN, Talhinhas P, Várzea V, Cai L, Paulo OS, Batista D.

Mycologia. 2012 Mar-Apr;104(2):396-409. doi: 10.3852/11-145. Epub 2011 Nov 15.

PMID:
22086913
17.

Chemical profiling of Portuguese Pinus pinea L. nuts.

Evaristo I, Batista D, Correia I, Correia P, Costa R.

J Sci Food Agric. 2010 Apr 30;90(6):1041-9. doi: 10.1002/jsfa.3914.

PMID:
20355145
18.

Efficient and stable transformation of hop (Humulus lupulus L.) var. Eroica by particle bombardment.

Batista D, Fonseca S, Serrazina S, Figueiredo A, Pais MS.

Plant Cell Rep. 2008 Jul;27(7):1185-96. doi: 10.1007/s00299-008-0537-6. Epub 2008 Mar 28.

PMID:
18369628

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