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Items: 1 to 20 of 44

1.

StructureDistiller: Structural relevance scoring identifies the most informative entries of a contact map.

Bittrich S, Schroeder M, Labudde D.

Sci Rep. 2019 Dec 6;9(1):18517. doi: 10.1038/s41598-019-55047-4.

2.

Structural change in GadD2 of Listeria monocytogenes field isolates supports nisin resistance.

Szendy M, Kalkhof S, Bittrich S, Kaiser F, Leberecht C, Labudde D, Noll M.

Int J Food Microbiol. 2019 Sep 16;305:108240. doi: 10.1016/j.ijfoodmicro.2019.108240. Epub 2019 Jun 4.

PMID:
31202151
3.

Pyridine Nucleotide Coenzyme Specificity of p-Hydroxybenzoate Hydroxylase and Related Flavoprotein Monooxygenases.

Westphal AH, Tischler D, Heinke F, Hofmann S, Gröning JAD, Labudde D, van Berkel WJH.

Front Microbiol. 2018 Dec 18;9:3050. doi: 10.3389/fmicb.2018.03050. eCollection 2018.

4.

Application of an interpretable classification model on Early Folding Residues during protein folding.

Bittrich S, Kaden M, Leberecht C, Kaiser F, Villmann T, Labudde D.

BioData Min. 2019 Jan 5;12:1. doi: 10.1186/s13040-018-0188-2. eCollection 2019.

5.

Characterizing the relation of functional and Early Folding Residues in protein structures using the example of aminoacyl-tRNA synthetases.

Bittrich S, Schroeder M, Labudde D.

PLoS One. 2018 Oct 30;13(10):e0206369. doi: 10.1371/journal.pone.0206369. eCollection 2018.

6.

Detailed Analysis of 17β-Estradiol-Aptamer Interactions: A Molecular Dynamics Simulation Study.

Eisold A, Labudde D.

Molecules. 2018 Jul 11;23(7). pii: E1690. doi: 10.3390/molecules23071690.

7.

Unsupervised Discovery of Geometrically Common Structural Motifs and Long-Range Contacts in Protein 3D Structures.

Kaiser F, Labudde D.

IEEE/ACM Trans Comput Biol Bioinform. 2019 Mar-Apr;16(2):671-680. doi: 10.1109/TCBB.2017.2786250. Epub 2017 Dec 22.

PMID:
29990265
8.

Backbone Brackets and Arginine Tweezers delineate Class I and Class II aminoacyl tRNA synthetases.

Kaiser F, Bittrich S, Salentin S, Leberecht C, Haupt VJ, Krautwurst S, Schroeder M, Labudde D.

PLoS Comput Biol. 2018 Apr 16;14(4):e1006101. doi: 10.1371/journal.pcbi.1006101. eCollection 2018 Apr.

9.

Towards substrate-independent age estimation of blood stains based on dimensionality reduction and k-nearest neighbor classification of absorbance spectroscopic data.

Bergmann T, Heinke F, Labudde D.

Forensic Sci Int. 2017 Sep;278:1-8. doi: 10.1016/j.forsciint.2017.05.023. Epub 2017 Jun 8.

PMID:
28686961
10.

Simulation of diffusion using a modular cell dynamic simulation system.

Leberecht C, Heinke F, Labudde D.

In Silico Biol. 2017;12(3-4):129-142. doi: 10.3233/ISB-170468.

PMID:
28482632
11.

Loss of heterozygosity in FANCG, FANCF and BRIP1 from head and neck squamous cell carcinoma of the oral cavity.

Türke C, Horn S, Petto C, Labudde D, Lauer G, Wittenburg G.

Int J Oncol. 2017 Jun;50(6):2207-2220. doi: 10.3892/ijo.2017.3974. Epub 2017 Apr 24.

PMID:
28440438
12.

PIPINO: A Software Package to Facilitate the Identification of Protein-Protein Interactions from Affinity Purification Mass Spectrometry Data.

Kalkhof S, Schildbach S, Blumert C, Horn F, von Bergen M, Labudde D.

Biomed Res Int. 2016;2016:2891918. doi: 10.1155/2016/2891918. Epub 2016 Feb 7.

13.

SequenceCEROSENE: a computational method and web server to visualize spatial residue neighborhoods at the sequence level.

Heinke F, Bittrich S, Kaiser F, Labudde D.

BioData Min. 2016 Jan 27;9:6. doi: 10.1186/s13040-016-0083-7. eCollection 2016.

14.

Numeric promoter description - A comparative view on concepts and general application.

Beier R, Labudde D.

J Mol Graph Model. 2016 Jan;63:65-77. doi: 10.1016/j.jmgm.2015.11.011. Epub 2015 Nov 23.

PMID:
26655334
15.

Fit3D: a web application for highly accurate screening of spatial residue patterns in protein structure data.

Kaiser F, Eisold A, Bittrich S, Labudde D.

Bioinformatics. 2016 Mar 1;32(5):792-4. doi: 10.1093/bioinformatics/btv637. Epub 2015 Oct 30.

PMID:
26519504
16.

Evolutionary Influenced Interaction Pattern as Indicator for the Investigation of Natural Variants Causing Nephrogenic Diabetes Insipidus.

Grunert S, Labudde D.

Comput Math Methods Med. 2015;2015:641393. doi: 10.1155/2015/641393. Epub 2015 May 28.

17.

The observation of evolutionary interaction pattern pairs in membrane proteins.

Grunert S, Labudde D.

BMC Struct Biol. 2015 Mar 24;15:6. doi: 10.1186/s12900-015-0033-5.

18.

A Novel Algorithm for Enhanced Structural Motif Matching in Proteins.

Kaiser F, Eisold A, Labudde D.

J Comput Biol. 2015 Jul;22(7):698-713. doi: 10.1089/cmb.2014.0263. Epub 2015 Feb 19.

PMID:
25695840
19.

New strategies for evaluation and analysis of SELEX experiments.

Beier R, Boschke E, Labudde D.

Biomed Res Int. 2014;2014:849743. doi: 10.1155/2014/849743. Epub 2014 Mar 19.

20.

Scaffold preferences of mesenchymal stromal cells and adipose-derived stem cells from green fluorescent protein transgenic mice influence the tissue engineering of bone.

Wittenburg G, Flade V, Garbe AI, Lauer G, Labudde D.

Br J Oral Maxillofac Surg. 2014 May;52(5):409-14. doi: 10.1016/j.bjoms.2014.02.023. Epub 2014 Mar 27.

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