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Core Metabolism Shifts during Growth on Methanol versus Methane in the Methanotroph Methylomicrobium buryatense 5GB1.

Fu Y, He L, Reeve J, Beck DAC, Lidstrom ME.

MBio. 2019 Apr 9;10(2). pii: e00406-19. doi: 10.1128/mBio.00406-19.


Mosaic plasmids are abundant and unevenly distributed across prokaryotic taxa.

Pesesky MW, Tilley R, Beck DAC.

Plasmid. 2019 Mar;102:10-18. doi: 10.1016/j.plasmid.2019.02.003. Epub 2019 Feb 22.


Oxygen-limited metabolism in the methanotroph Methylomicrobium buryatense 5GB1C.

Gilman A, Fu Y, Hendershott M, Chu F, Puri AW, Smith AL, Pesesky M, Lieberman R, Beck DAC, Lidstrom ME.

PeerJ. 2017 Oct 20;5:e3945. doi: 10.7717/peerj.3945. eCollection 2017.


Metabolic crosstalk regulates Porphyromonas gingivalis colonization and virulence during oral polymicrobial infection.

Kuboniwa M, Houser JR, Hendrickson EL, Wang Q, Alghamdi SA, Sakanaka A, Miller DP, Hutcherson JA, Wang T, Beck DAC, Whiteley M, Amano A, Wang H, Marcotte EM, Hackett M, Lamont RJ.

Nat Microbiol. 2017 Nov;2(11):1493-1499. doi: 10.1038/s41564-017-0021-6. Epub 2017 Sep 18.


DNA-SIP based genome-centric metagenomics identifies key long-chain fatty acid-degrading populations in anaerobic digesters with different feeding frequencies.

Ziels RM, Sousa DZ, Stensel HD, Beck DAC.

ISME J. 2018 Jan;12(1):112-123. doi: 10.1038/ismej.2017.143. Epub 2017 Sep 12.


Long-chain fatty acid feeding frequency in anaerobic codigestion impacts syntrophic community structure and biokinetics.

Ziels RM, Beck DAC, Stensel HD.

Water Res. 2017 Jun 15;117:218-229. doi: 10.1016/j.watres.2017.03.060. Epub 2017 Mar 31.


Insights into Dynamic Polymicrobial Synergy Revealed by Time-Coursed RNA-Seq.

Hendrickson EL, Beck DA, Miller DP, Wang Q, Whiteley M, Lamont RJ, Hackett M.

Front Microbiol. 2017 Feb 28;8:261. doi: 10.3389/fmicb.2017.00261. eCollection 2017.


Lanthanide-dependent cross-feeding of methane-derived carbon is linked by microbial community interactions.

Krause SM, Johnson T, Samadhi Karunaratne Y, Fu Y, Beck DA, Chistoserdova L, Lidstrom ME.

Proc Natl Acad Sci U S A. 2017 Jan 10;114(2):358-363. doi: 10.1073/pnas.1619871114. Epub 2016 Dec 27.


Quorum Sensing in a Methane-Oxidizing Bacterium.

Puri AW, Schaefer AL, Fu Y, Beck DAC, Greenberg EP, Lidstrom ME.

J Bacteriol. 2017 Feb 14;199(5). pii: e00773-16. doi: 10.1128/JB.00773-16. Print 2017 Mar 1.


MxaY regulates the lanthanide-mediated methanol dehydrogenase switch in Methylomicrobium buryatense.

Chu F, Beck DA, Lidstrom ME.

PeerJ. 2016 Sep 7;4:e2435. doi: 10.7717/peerj.2435. eCollection 2016.


Microbial community adaptation influences long-chain fatty acid conversion during anaerobic codigestion of fats, oils, and grease with municipal sludge.

Ziels RM, Karlsson A, Beck DAC, Ejlertsson J, Yekta SS, Bjorn A, Stensel HD, Svensson BH.

Water Res. 2016 Oct 15;103:372-382. doi: 10.1016/j.watres.2016.07.043. Epub 2016 Jul 20.


Difference in C3-C4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1.

Fu Y, Beck DA, Lidstrom ME.

BMC Microbiol. 2016 Jul 19;16(1):156. doi: 10.1186/s12866-016-0778-4.


A Synthetic Ecology Perspective: How Well Does Behavior of Model Organisms in the Laboratory Predict Microbial Activities in Natural Habitats?

Yu Z, Krause SM, Beck DA, Chistoserdova L.

Front Microbiol. 2016 Jun 15;7:946. doi: 10.3389/fmicb.2016.00946. eCollection 2016.


Comprehensive molecular characterization of Methylobacterium extorquens AM1 adapted for 1-butanol tolerance.

Hu B, Yang YM, Beck DA, Wang QW, Chen WJ, Yang J, Lidstrom ME, Yang S.

Biotechnol Biofuels. 2016 Apr 11;9:84. doi: 10.1186/s13068-016-0497-y. eCollection 2016.


Genome-scale metabolic reconstructions and theoretical investigation of methane conversion in Methylomicrobium buryatense strain 5G(B1).

de la Torre A, Metivier A, Chu F, Laurens LM, Beck DA, Pienkos PT, Lidstrom ME, Kalyuzhnaya MG.

Microb Cell Fact. 2015 Nov 25;14:188. doi: 10.1186/s12934-015-0377-3.


Potential for using a hermetically-sealed, positive-pressured isocage system for studies involving germ-free mice outside a flexible-film isolator.

Paik J, Pershutkina O, Meeker S, Yi JJ, Dowling S, Hsu C, Hajjar AM, Maggio-Price L, Beck DA.

Gut Microbes. 2015 Jul 4;6(4):255-65. doi: 10.1080/19490976.2015.1064576. Epub 2015 Jul 15.


Monitoring the dynamics of syntrophic β-oxidizing bacteria during anaerobic degradation of oleic acid by quantitative PCR.

Ziels RM, Beck DA, Martí M, Gough HL, Stensel HD, Svensson BH.

FEMS Microbiol Ecol. 2015 Apr;91(4). pii: fiv028. doi: 10.1093/femsec/fiv028. Epub 2015 Mar 19.


Oxygen availability is a major factor in determining the composition of microbial communities involved in methane oxidation.

Hernandez ME, Beck DA, Lidstrom ME, Chistoserdova L.

PeerJ. 2015 Feb 24;3:e801. doi: 10.7717/peerj.801. eCollection 2015.


Multiphyletic origins of methylotrophy in Alphaproteobacteria, exemplified by comparative genomics of Lake Washington isolates.

Beck DA, McTaggart TL, Setboonsarng U, Vorobev A, Goodwin L, Shapiro N, Woyke T, Kalyuzhnaya MG, Lidstrom ME, Chistoserdova L.

Environ Microbiol. 2015 Mar;17(3):547-54. doi: 10.1111/1462-2920.12736. Epub 2015 Feb 11.


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