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Items: 1 to 20 of 28

1.

De Novo Sequencing, Assembly, and Annotation of Four Threespine Stickleback Genomes Based on Microfluidic Partitioned DNA Libraries.

Berner D, Roesti M, Bilobram S, Chan SK, Kirk H, Pandoh P, Taylor GA, Zhao Y, Jones SJM, DeFaveri J.

Genes (Basel). 2019 Jun 3;10(6). pii: E426. doi: 10.3390/genes10060426.

2.
3.

The protective variant rs7173049 at LOXL1 locus impacts on retinoic acid signaling pathway in pseudoexfoliation syndrome.

Berner D, Hoja U, Zenkel M, Ross JJ, Uebe S, Paoli D, Frezzotti P, Rautenbach RM, Ziskind A, Williams SE, Carmichael TR, Ramsay M, Topouzis F, Chatzikyriakidou A, Lambropoulos A, Sundaresan P, Ayub H, Akhtar F, Qamar R, Zenteno JC, Cruz-Aguilar M, Astakhov YS, Dubina M, Wiggs J, Ozaki M, Kruse FE, Aung T, Reis A, Khor CC, Pasutto F, Schlötzer-Schrehardt U.

Hum Mol Genet. 2019 Apr 15. pii: ddz075. doi: 10.1093/hmg/ddz075. [Epub ahead of print]

PMID:
30986821
4.

How clonal are clones? A quest for loss of heterozygosity during asexual reproduction in Daphnia magna.

Dukić M, Berner D, Haag CR, Ebert D.

J Evol Biol. 2019 Jun;32(6):619-628. doi: 10.1111/jeb.13443. Epub 2019 Apr 10.

PMID:
30888725
5.

Predictable genome-wide sorting of standing genetic variation during parallel adaptation to basic versus acidic environments in stickleback fish.

Haenel Q, Roesti M, Moser D, MacColl ADC, Berner D.

Evol Lett. 2019 Jan 23;3(1):28-42. doi: 10.1002/evl3.99. eCollection 2019 Feb.

6.

Meta-analysis of chromosome-scale crossover rate variation in eukaryotes and its significance to evolutionary genomics.

Haenel Q, Laurentino TG, Roesti M, Berner D.

Mol Ecol. 2018 Jun;27(11):2477-2497. doi: 10.1111/mec.14699. Epub 2018 May 23. Review.

PMID:
29676042
7.

Posttranscriptional Regulation of LOXL1 Expression Via Alternative Splicing and Nonsense-Mediated mRNA Decay as an Adaptive Stress Response.

Berner D, Zenkel M, Pasutto F, Hoja U, Liravi P, Gusek-Schneider GC, Kruse FE, Schödel J, Reis A, Schlötzer-Schrehardt U.

Invest Ophthalmol Vis Sci. 2017 Nov 1;58(13):5930-5940. doi: 10.1167/iovs.17-22963.

PMID:
29164236
8.

Genomics of adaptive divergence with chromosome-scale heterogeneity in crossover rate.

Berner D, Roesti M.

Mol Ecol. 2017 Nov;26(22):6351-6369. doi: 10.1111/mec.14373. Epub 2017 Nov 24.

PMID:
28994152
9.

Genetic association study of exfoliation syndrome identifies a protective rare variant at LOXL1 and five new susceptibility loci.

Aung T, Ozaki M, Lee MC, Schlötzer-Schrehardt U, Thorleifsson G, Mizoguchi T, Igo RP Jr, Haripriya A, Williams SE, Astakhov YS, Orr AC, Burdon KP, Nakano S, Mori K, Abu-Amero K, Hauser M, Li Z, Prakadeeswari G, Bailey JNC, Cherecheanu AP, Kang JH, Nelson S, Hayashi K, Manabe SI, Kazama S, Zarnowski T, Inoue K, Irkec M, Coca-Prados M, Sugiyama K, Järvelä I, Schlottmann P, Lerner SF, Lamari H, Nilgün Y, Bikbov M, Park KH, Cha SC, Yamashiro K, Zenteno JC, Jonas JB, Kumar RS, Perera SA, Chan ASY, Kobakhidze N, George R, Vijaya L, Do T, Edward DP, de Juan Marcos L, Pakravan M, Moghimi S, Ideta R, Bach-Holm D, Kappelgaard P, Wirostko B, Thomas S, Gaston D, Bedard K, Greer WL, Yang Z, Chen X, Huang L, Sang J, Jia H, Jia L, Qiao C, Zhang H, Liu X, Zhao B, Wang YX, Xu L, Leruez S, Reynier P, Chichua G, Tabagari S, Uebe S, Zenkel M, Berner D, Mossböck G, Weisschuh N, Hoja U, Welge-Luessen UC, Mardin C, Founti P, Chatzikyriakidou A, Pappas T, Anastasopoulos E, Lambropoulos A, Ghosh A, Shetty R, Porporato N, Saravanan V, Venkatesh R, Shivkumar C, Kalpana N, Sarangapani S, Kanavi MR, Beni AN, Yazdani S, Lashay A, Naderifar H, Khatibi N, Fea A, Lavia C, Dallorto L, Rolle T, Frezzotti P, Paoli D, Salvi E, Manunta P, Mori Y, Miyata K, Higashide T, Chihara E, Ishiko S, Yoshida A, Yanagi M, Kiuchi Y, Ohashi T, Sakurai T, Sugimoto T, Chuman H, Aihara M, Inatani M, Miyake M, Gotoh N, Matsuda F, Yoshimura N, Ikeda Y, Ueno M, Sotozono C, Jeoung JW, Sagong M, Park KH, Ahn J, Cruz-Aguilar M, Ezzouhairi SM, Rafei A, Chong YF, Ng XY, Goh SR, Chen Y, Yong VHK, Khan MI, Olawoye OO, Ashaye AO, Ugbede I, Onakoya A, Kizor-Akaraiwe N, Teekhasaenee C, Suwan Y, Supakontanasan W, Okeke S, Uche NJ, Asimadu I, Ayub H, Akhtar F, Kosior-Jarecka E, Lukasik U, Lischinsky I, Castro V, Grossmann RP, Sunaric Megevand G, Roy S, Dervan E, Silke E, Rao A, Sahay P, Fornero P, Cuello O, Sivori D, Zompa T, Mills RA, Souzeau E, Mitchell P, Wang JJ, Hewitt AW, Coote M, Crowston JG, Astakhov SY, Akopov EL, Emelyanov A, Vysochinskaya V, Kazakbaeva G, Fayzrakhmanov R, Al-Obeidan SA, Owaidhah O, Aljasim LA, Chowbay B, Foo JN, Soh RQ, Sim KS, Xie Z, Cheong AWO, Mok SQ, Soo HM, Chen XY, Peh SQ, Heng KK, Husain R, Ho SL, Hillmer AM, Cheng CY, Escudero-Domínguez FA, González-Sarmiento R, Martinon-Torres F, Salas A, Pathanapitoon K, Hansapinyo L, Wanichwecharugruang B, Kitnarong N, Sakuntabhai A, Nguyn HX, Nguyn GTT, Nguyn TV, Zenz W, Binder A, Klobassa DS, Hibberd ML, Davila S, Herms S, Nöthen MM, Moebus S, Rautenbach RM, Ziskind A, Carmichael TR, Ramsay M, Álvarez L, García M, González-Iglesias H, Rodríguez-Calvo PP, Fernández-Vega Cueto L, Oguz Ç, Tamcelik N, Atalay E, Batu B, Aktas D, Kasım B, Wilson MR, Coleman AL, Liu Y, Challa P, Herndon L, Kuchtey RW, Kuchtey J, Curtin K, Chaya CJ, Crandall A, Zangwill LM, Wong TY, Nakano M, Kinoshita S, den Hollander AI, Vesti E, Fingert JH, Lee RK, Sit AJ, Shingleton BJ, Wang N, Cusi D, Qamar R, Kraft P, Pericak-Vance MA, Raychaudhuri S, Heegaard S, Kivelä T, Reis A, Kruse FE, Weinreb RN, Pasquale LR, Haines JL, Thorsteinsdottir U, Jonasson F, Allingham RR, Milea D, Ritch R, Kubota T, Tashiro K, Vithana EN, Micheal S, Topouzis F, Craig JE, Dubina M, Sundaresan P, Stefansson K, Wiggs JL, Pasutto F, Khor CC.

Nat Genet. 2017 Jul;49(7):993-1004. doi: 10.1038/ng.3875. Epub 2017 May 29.

10.

Pseudoexfoliation syndrome-associated genetic variants affect transcription factor binding and alternative splicing of LOXL1.

Pasutto F, Zenkel M, Hoja U, Berner D, Uebe S, Ferrazzi F, Schödel J, Liravi P, Ozaki M, Paoli D, Frezzotti P, Mizoguchi T, Nakano S, Kubota T, Manabe S, Salvi E, Manunta P, Cusi D, Gieger C, Wichmann HE, Aung T, Khor CC, Kruse FE, Reis A, Schlötzer-Schrehardt U.

Nat Commun. 2017 May 23;8:15466. doi: 10.1038/ncomms15466.

11.

Clines Arc through Multivariate Morphospace.

Lohman BK, Berner D, Bolnick DI.

Am Nat. 2017 Apr;189(4):354-367. doi: 10.1086/690808. Epub 2017 Feb 2.

PMID:
28350497
12.

A high-density genetic map reveals variation in recombination rate across the genome of Daphnia magna.

Dukić M, Berner D, Roesti M, Haag CR, Ebert D.

BMC Genet. 2016 Oct 13;17(1):137.

13.

Erratum: The genomics of ecological vicariance in threespine stickleback fish.

Roesti M, Kueng B, Moser D, Berner D.

Nat Commun. 2015 Dec 15;6:10229. doi: 10.1038/ncomms10229. No abstract available.

14.

The genomics of ecological vicariance in threespine stickleback fish.

Roesti M, Kueng B, Moser D, Berner D.

Nat Commun. 2015 Nov 10;6:8767. doi: 10.1038/ncomms9767. Erratum in: Nat Commun. 2015;6:10229.

15.

The genomics of organismal diversification illuminated by adaptive radiations.

Berner D, Salzburger W.

Trends Genet. 2015 Sep;31(9):491-9. doi: 10.1016/j.tig.2015.07.002. Epub 2015 Aug 7. Review.

PMID:
26259669
16.

The genomic signature of parallel adaptation from shared genetic variation.

Roesti M, Gavrilets S, Hendry AP, Salzburger W, Berner D.

Mol Ecol. 2014 Aug;23(16):3944-56. doi: 10.1111/mec.12720. Epub 2014 Apr 5.

17.

Genetic architecture of skeletal evolution in European lake and stream stickleback.

Berner D, Moser D, Roesti M, Buescher H, Salzburger W.

Evolution. 2014 Jun;68(6):1792-805. doi: 10.1111/evo.12390. Epub 2014 Mar 20.

PMID:
24571250
18.

Strong genome-wide divergence between sympatric European river and brook lampreys.

Mateus CS, Stange M, Berner D, Roesti M, Quintella BR, Alves MJ, Almeida PR, Salzburger W.

Curr Biol. 2013 Aug 5;23(15):R649-50. doi: 10.1016/j.cub.2013.06.026.

19.

Recombination in the threespine stickleback genome--patterns and consequences.

Roesti M, Moser D, Berner D.

Mol Ecol. 2013 Jun;22(11):3014-27. doi: 10.1111/mec.12322. Epub 2013 Apr 22. Erratum in: Mol Ecol. 2013 Jul;22(13):3652. Mol Ecol. 2013 Oct;22(20):5270.

PMID:
23601112
20.

Repeated lake-stream divergence in stickleback life history within a Central European lake basin.

Moser D, Roesti M, Berner D.

PLoS One. 2012;7(12):e50620. doi: 10.1371/journal.pone.0050620. Epub 2012 Dec 4.

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