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Items: 16


Analysis of MAPK and MAPKK gene families in wheat and related Triticeae species.

Goyal RK, Tulpan D, Chomistek N, González-Peña Fundora D, West C, Ellis BE, Frick M, Laroche A, Foroud NA.

BMC Genomics. 2018 Mar 5;19(1):178. doi: 10.1186/s12864-018-4545-9.


Temporal ordering of substitutions in RNA evolution: Uncovering the structural evolution of the Human Accelerated Region 1.

Walter Costa MB, Höner Zu Siederdissen C, Tulpan D, Stadler PF, Nowick K.

J Theor Biol. 2018 Feb 7;438:143-150. doi: 10.1016/j.jtbi.2017.11.015. Epub 2017 Nov 23.


The Plant Orthology Browser: An Orthology and Gene-Order Visualizer for Plant Comparative Genomics.

Tulpan D, Leger S.

Plant Genome. 2017 Mar;10(1). doi: 10.3835/plantgenome2016.08.0078.


Bioinformatics identification of new targets for improving low temperature stress tolerance in spring and winter wheat.

Tchagang AB, Fauteux F, Tulpan D, Pan Y.

BMC Bioinformatics. 2017 Mar 16;18(1):174. doi: 10.1186/s12859-017-1596-x.


Metabolomics and Cheminformatics Analysis of Antifungal Function of Plant Metabolites.

Cuperlovic-Culf M, Rajagopalan N, Tulpan D, Loewen MC.

Metabolites. 2016 Sep 30;6(4). pii: E31.


Exogenous Abscisic Acid and Gibberellic Acid Elicit Opposing Effects on Fusarium graminearum Infection in Wheat.

Buhrow LM, Cram D, Tulpan D, Foroud NA, Loewen MC.

Phytopathology. 2016 Sep;106(9):986-96. doi: 10.1094/PHYTO-01-16-0033-R. Epub 2016 Jun 17.


Enrichment of Triticum aestivum gene annotations using ortholog cliques and gene ontologies in other plants.

Tulpan D, Leger S, Tchagang A, Pan Y.

BMC Genomics. 2015 Apr 15;16:299. doi: 10.1186/s12864-015-1496-2.


Thermodynamic Post-Processing versus GC-Content Pre-Processing for DNA Codes Satisfying the Hamming Distance and Reverse-Complement Constraints.

Tulpan D, Smith DH, Montemanni R.

IEEE/ACM Trans Comput Biol Bioinform. 2014 Mar-Apr;11(2):441-52. doi: 10.1109/TCBB.2014.2299815.


HyDEn: a hybrid steganocryptographic approach for data encryption using randomized error-correcting DNA codes.

Tulpan D, Regoui C, Durand G, Belliveau L, Léger S.

Biomed Res Int. 2013;2013:634832. doi: 10.1155/2013/634832. Epub 2013 Jul 28.


MetaboHunter: an automatic approach for identification of metabolites from 1H-NMR spectra of complex mixtures.

Tulpan D, Léger S, Belliveau L, Culf A, Cuperlović-Culf M.

BMC Bioinformatics. 2011 Oct 14;12:400. doi: 10.1186/1471-2105-12-400.


Recent patents and challenges on DNA microarray probe design technologies.

Tulpan D.

Recent Pat DNA Gene Seq. 2010 Nov;4(3):210-7. Review.


The microarray manual curation tool (MMCT): A Web server for microarray probe evaluations.

Tulpan D, Belliveau L, Léger S.

Bioinformation. 2010 Feb 28;4(8):344-6.


Free energy estimation of short DNA duplex hybridizations.

Tulpan D, Andronescu M, Leger S.

BMC Bioinformatics. 2010 Feb 24;11:105. doi: 10.1186/1471-2105-11-105.


InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

Lynn DJ, Winsor GL, Chan C, Richard N, Laird MR, Barsky A, Gardy JL, Roche FM, Chan TH, Shah N, Lo R, Naseer M, Que J, Yau M, Acab M, Tulpan D, Whiteside MD, Chikatamarla A, Mah B, Munzner T, Hokamp K, Hancock RE, Brinkman FS.

Mol Syst Biol. 2008;4:218. doi: 10.1038/msb.2008.55. Epub 2008 Sep 2.


A thermodynamic approach to designing structure-free combinatorial DNA word sets.

Shortreed MR, Chang SB, Hong D, Phillips M, Campion B, Tulpan DC, Andronescu M, Condon A, Hoos HH, Smith LM.

Nucleic Acids Res. 2005 Sep 2;33(15):4965-77. Print 2005.


Thermodynamically based DNA strand design.

Tulpan D, Andronescu M, Chang SB, Shortreed MR, Condon A, Hoos HH, Smith LM.

Nucleic Acids Res. 2005 Sep 6;33(15):4951-64. Print 2005.

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