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Items: 1 to 20 of 91

1.

Marine DNA Viral Macro- and Microdiversity from Pole to Pole.

Gregory AC, Zayed AA, Conceição-Neto N, Temperton B, Bolduc B, Alberti A, Ardyna M, Arkhipova K, Carmichael M, Cruaud C, Dimier C, Domínguez-Huerta G, Ferland J, Kandels S, Liu Y, Marec C, Pesant S, Picheral M, Pisarev S, Poulain J, Tremblay JÉ, Vik D; Tara Oceans Coordinators, Babin M, Bowler C, Culley AI, de Vargas C, Dutilh BE, Iudicone D, Karp-Boss L, Roux S, Sunagawa S, Wincker P, Sullivan MB.

Cell. 2019 May 16;177(5):1109-1123.e14. doi: 10.1016/j.cell.2019.03.040. Epub 2019 Apr 25.

PMID:
31031001
2.

Coupling between taxonomic and functional diversity in protistan coastal communities.

Ramond P, Sourisseau M, Simon N, Romac S, Schmitt S, Rigaut-Jalabert F, Henry N, de Vargas C, Siano R.

Environ Microbiol. 2019 Feb;21(2):730-749. doi: 10.1111/1462-2920.14537. Epub 2019 Feb 15.

PMID:
30672084
3.

Diatom diversity through HTS-metabarcoding in coastal European seas.

Piredda R, Claverie JM, Decelle J, de Vargas C, Dunthorn M, Edvardsen B, Eikrem W, Forster D, Kooistra WHCF, Logares R, Massana R, Montresor M, Not F, Ogata H, Pawlowski J, Romac S, Sarno D, Stoeck T, Zingone A.

Sci Rep. 2018 Dec 24;8(1):18059. doi: 10.1038/s41598-018-36345-9.

4.

Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean.

Decelle J, Carradec Q, Pochon X, Henry N, Romac S, Mahé F, Dunthorn M, Kourlaiev A, Voolstra CR, Wincker P, de Vargas C.

Curr Biol. 2018 Nov 19;28(22):3625-3633.e3. doi: 10.1016/j.cub.2018.09.024. Epub 2018 Nov 8.

PMID:
30416058
5.

EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution.

Del Campo J, Kolisko M, Boscaro V, Santoferrara LF, Nenarokov S, Massana R, Guillou L, Simpson A, Berney C, de Vargas C, Brown MW, Keeling PJ, Wegener Parfrey L.

PLoS Biol. 2018 Sep 17;16(9):e2005849. doi: 10.1371/journal.pbio.2005849. eCollection 2018 Sep.

6.

Ubiquitous abundance distribution of non-dominant plankton across the global ocean.

Ser-Giacomi E, Zinger L, Malviya S, De Vargas C, Karsenti E, Bowler C, De Monte S.

Nat Ecol Evol. 2018 Aug;2(8):1243-1249. doi: 10.1038/s41559-018-0587-2. Epub 2018 Jun 18.

PMID:
29915345
7.

Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity.

López-Escardó D, Paps J, de Vargas C, Massana R, Ruiz-Trillo I, Del Campo J.

Sci Rep. 2018 Jun 14;8(1):9106. doi: 10.1038/s41598-018-27509-8.

8.

An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region.

Hume BCC, Ziegler M, Poulain J, Pochon X, Romac S, Boissin E, de Vargas C, Planes S, Wincker P, Voolstra CR.

PeerJ. 2018 May 23;6:e4816. doi: 10.7717/peerj.4816. eCollection 2018.

9.

Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export.

Leblanc K, Quéguiner B, Diaz F, Cornet V, Michel-Rodriguez M, Durrieu de Madron X, Bowler C, Malviya S, Thyssen M, Grégori G, Rembauville M, Grosso O, Poulain J, de Vargas C, Pujo-Pay M, Conan P.

Nat Commun. 2018 Mar 5;9(1):953. doi: 10.1038/s41467-018-03376-9.

10.

Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages.

Morard R, Garet-Delmas MJ, Mahé F, Romac S, Poulain J, Kucera M, de Vargas C.

Sci Rep. 2018 Feb 7;8(1):2539. doi: 10.1038/s41598-018-20833-z.

11.

A global ocean atlas of eukaryotic genes.

Carradec Q, Pelletier E, Da Silva C, Alberti A, Seeleuthner Y, Blanc-Mathieu R, Lima-Mendez G, Rocha F, Tirichine L, Labadie K, Kirilovsky A, Bertrand A, Engelen S, Madoui MA, Méheust R, Poulain J, Romac S, Richter DJ, Yoshikawa G, Dimier C, Kandels-Lewis S, Picheral M, Searson S; Tara Oceans Coordinators, Jaillon O, Aury JM, Karsenti E, Sullivan MB, Sunagawa S, Bork P, Not F, Hingamp P, Raes J, Guidi L, Ogata H, de Vargas C, Iudicone D, Bowler C, Wincker P.

Nat Commun. 2018 Jan 25;9(1):373. doi: 10.1038/s41467-017-02342-1.

12.

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans.

Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J, Mangot JF, Poulain J, Labadie K, Logares R, Sunagawa S, de Berardinis V, Salanoubat M, Dimier C, Kandels-Lewis S, Picheral M, Searson S; Tara Oceans Coordinators, Pesant S, Poulton N, Stepanauskas R, Bork P, Bowler C, Hingamp P, Sullivan MB, Iudicone D, Massana R, Aury JM, Henrissat B, Karsenti E, Jaillon O, Sieracki M, de Vargas C, Wincker P.

Nat Commun. 2018 Jan 22;9(1):310. doi: 10.1038/s41467-017-02235-3.

13.

The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean.

Vincent FJ, Colin S, Romac S, Scalco E, Bittner L, Garcia Y, Lopes RM, Dolan JR, Zingone A, de Vargas C, Bowler C.

ISME J. 2018 Apr;12(4):1094-1108. doi: 10.1038/s41396-017-0029-1. Epub 2018 Jan 18.

14.

Neobodonids are dominant kinetoplastids in the global ocean.

Flegontova O, Flegontov P, Malviya S, Poulain J, de Vargas C, Bowler C, Lukeš J, Horák A.

Environ Microbiol. 2018 Feb;20(2):878-889. doi: 10.1111/1462-2920.14034.

PMID:
29266706
15.

Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes.

Colin S, Coelho LP, Sunagawa S, Bowler C, Karsenti E, Bork P, Pepperkok R, de Vargas C.

Elife. 2017 Oct 31;6. pii: e26066. doi: 10.7554/eLife.26066.

16.

Insights into the harmful algal flora in northwestern Mediterranean coastal lagoons revealed by pyrosequencing metabarcodes of the 28S rRNA gene.

Grzebyk D, Audic S, Lasserre B, Abadie E, de Vargas C, Bec B.

Harmful Algae. 2017 Sep;68:1-16. doi: 10.1016/j.hal.2017.06.003. Epub 2017 Jul 24.

PMID:
28962972
17.

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests.

Mahé F, de Vargas C, Bass D, Czech L, Stamatakis A, Lara E, Singer D, Mayor J, Bunge J, Sernaker S, Siemensmeyer T, Trautmann I, Romac S, Berney C, Kozlov A, Mitchell EAD, Seppey CVW, Egge E, Lentendu G, Wirth R, Trueba G, Dunthorn M.

Nat Ecol Evol. 2017 Mar 20;1(4):91. doi: 10.1038/s41559-017-0091.

PMID:
28812652
18.

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.

Alberti A, Poulain J, Engelen S, Labadie K, Romac S, Ferrera I, Albini G, Aury JM, Belser C, Bertrand A, Cruaud C, Da Silva C, Dossat C, Gavory F, Gas S, Guy J, Haquelle M, Jacoby E, Jaillon O, Lemainque A, Pelletier E, Samson G, Wessner M; Genoscope Technical Team, Acinas SG, Royo-Llonch M, Cornejo-Castillo FM, Logares R, Fernández-Gómez B, Bowler C, Cochrane G, Amid C, Hoopen PT, De Vargas C, Grimsley N, Desgranges E, Kandels-Lewis S, Ogata H, Poulton N, Sieracki ME, Stepanauskas R, Sullivan MB, Brum JR, Duhaime MB, Poulos BT, Hurwitz BL; Tara Oceans Consortium Coordinators, Pesant S, Karsenti E, Wincker P.

Sci Data. 2017 Aug 1;4:170093. doi: 10.1038/sdata.2017.93.

19.

UniEuk: Time to Speak a Common Language in Protistology!

Berney C, Ciuprina A, Bender S, Brodie J, Edgcomb V, Kim E, Rajan J, Parfrey LW, Adl S, Audic S, Bass D, Caron DA, Cochrane G, Czech L, Dunthorn M, Geisen S, Glöckner FO, Mahé F, Quast C, Kaye JZ, Simpson AGB, Stamatakis A, Del Campo J, Yilmaz P, de Vargas C.

J Eukaryot Microbiol. 2017 May;64(3):407-411. doi: 10.1111/jeu.12414. Epub 2017 Apr 21. Review.

20.

Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells.

Mangot JF, Logares R, Sánchez P, Latorre F, Seeleuthner Y, Mondy S, Sieracki ME, Jaillon O, Wincker P, Vargas C, Massana R.

Sci Rep. 2017 Jan 27;7:41498. doi: 10.1038/srep41498.

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