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Items: 1 to 20 of 48

1.

Incomplete genetic reconstitution of B cell pools contributes to prolonged immunosuppression after measles.

Petrova VN, Sawatsky B, Han AX, Laksono BM, Walz L, Parker E, Pieper K, Anderson CA, de Vries RD, Lanzavecchia A, Kellam P, von Messling V, de Swart RL, Russell CA.

Sci Immunol. 2019 Nov 1;4(41). pii: eaay6125. doi: 10.1126/sciimmunol.aay6125.

PMID:
31672862
2.

Inferring putative transmission clusters with Phydelity.

Han AX, Parker E, Maurer-Stroh S, Russell CA.

Virus Evol. 2019 Oct 9;5(2):vez039. doi: 10.1093/ve/vez039. eCollection 2019 Jul.

3.

Influenza A Hemagglutinin Passage Bias Sites and Host Specificity Mutations.

Lee RTC, Chang HH, Russell CA, Lipsitch M, Maurer-Stroh S.

Cells. 2019 Aug 22;8(9). pii: E958. doi: 10.3390/cells8090958.

4.

Genetic diversity and host adaptation of avian H5N1 influenza viruses during human infection.

Welkers MRA, Pawestri HA, Fonville JM, Sampurno OD, Pater M, Holwerda M, Han AX, Russell CA, Jeeninga RE, Setiawaty V, de Jong MD, Eggink D.

Emerg Microbes Infect. 2019;8(1):262-271. doi: 10.1080/22221751.2019.1575700.

5.

Phylogenetic Clustering by Linear Integer Programming (PhyCLIP).

Han AX, Parker E, Scholer F, Maurer-Stroh S, Russell CA.

Mol Biol Evol. 2019 Jul 1;36(7):1580-1595. doi: 10.1093/molbev/msz053.

6.

The Geographic Variation of Surveillance and Zoonotic Spillover Potential of Influenza Viruses in Domestic Poultry and Swine.

Berger KA, Pigott DM, Tomlinson F, Godding D, Maurer-Stroh S, Taye B, Sirota FL, Han A, Lee RTC, Gunalan V, Eisenhaber F, Hay SI, Russell CA.

Open Forum Infect Dis. 2018 Nov 27;5(12):ofy318. doi: 10.1093/ofid/ofy318. eCollection 2018 Dec.

7.

Individual immune selection pressure has limited impact on seasonal influenza virus evolution.

Han AX, Maurer-Stroh S, Russell CA.

Nat Ecol Evol. 2019 Feb;3(2):302-311. doi: 10.1038/s41559-018-0741-x. Epub 2018 Dec 3.

PMID:
30510176
8.

Combined Influence of B-Cell Receptor Rearrangement and Somatic Hypermutation on B-Cell Class-Switch Fate in Health and in Chronic Lymphocytic Leukemia.

Petrova VN, Muir L, McKay PF, Vassiliou GS, Smith KGC, Lyons PA, Russell CA, Anderson CA, Kellam P, Bashford-Rogers RJM.

Front Immunol. 2018 Aug 10;9:1784. doi: 10.3389/fimmu.2018.01784. eCollection 2018.

9.

Genome-wide evolutionary dynamics of influenza B viruses on a global scale.

Langat P, Raghwani J, Dudas G, Bowden TA, Edwards S, Gall A, Bedford T, Rambaut A, Daniels RS, Russell CA, Pybus OG, McCauley J, Kellam P, Watson SJ.

PLoS Pathog. 2017 Dec 28;13(12):e1006749. doi: 10.1371/journal.ppat.1006749. eCollection 2017 Dec.

10.

The evolution of seasonal influenza viruses.

Petrova VN, Russell CA.

Nat Rev Microbiol. 2018 Jan;16(1):60. doi: 10.1038/nrmicro.2017.146. Epub 2017 Nov 7.

PMID:
29109554
11.

The evolution of seasonal influenza viruses.

Petrova VN, Russell CA.

Nat Rev Microbiol. 2018 Jan;16(1):47-60. doi: 10.1038/nrmicro.2017.118. Epub 2017 Oct 30. Review. Erratum in: Nat Rev Microbiol. 2017 Nov 07;:.

PMID:
29081496
12.

Infectious disease management must be evolutionary.

Russell CA, de Jong MD.

Nat Ecol Evol. 2017 Aug;1(8):1053-1055. doi: 10.1038/s41559-017-0265-9. No abstract available.

PMID:
29046585
13.

Viral factors in influenza pandemic risk assessment.

Lipsitch M, Barclay W, Raman R, Russell CJ, Belser JA, Cobey S, Kasson PM, Lloyd-Smith JO, Maurer-Stroh S, Riley S, Beauchemin CA, Bedford T, Friedrich TC, Handel A, Herfst S, Murcia PR, Roche B, Wilke CO, Russell CA.

Elife. 2016 Nov 11;5. pii: e18491. doi: 10.7554/eLife.18491.

14.

Sick birds don't fly…or do they?

Russell CA.

Science. 2016 Oct 14;354(6309):174-175. No abstract available.

PMID:
27738156
15.

Selection of antigenically advanced variants of seasonal influenza viruses.

Li C, Hatta M, Burke DF, Ping J, Zhang Y, Ozawa M, Taft AS, Das SC, Hanson AP, Song J, Imai M, Wilker PR, Watanabe T, Watanabe S, Ito M, Iwatsuki-Horimoto K, Russell CA, James SL, Skepner E, Maher EA, Neumann G, Klimov AI, Kelso A, McCauley J, Wang D, Shu Y, Odagiri T, Tashiro M, Xu X, Wentworth DE, Katz JM, Cox NJ, Smith DJ, Kawaoka Y.

Nat Microbiol. 2016 May 23;1(6):16058. doi: 10.1038/nmicrobiol.2016.58.

16.

The global antigenic diversity of swine influenza A viruses.

Lewis NS, Russell CA, Langat P, Anderson TK, Berger K, Bielejec F, Burke DF, Dudas G, Fonville JM, Fouchier RA, Kellam P, Koel BF, Lemey P, Nguyen T, Nuansrichy B, Peiris JM, Saito T, Simon G, Skepner E, Takemae N; ESNIP3 consortium, Webby RJ, Van Reeth K, Brookes SM, Larsen L, Watson SJ, Brown IH, Vincent AL.

Elife. 2016 Apr 15;5:e12217. doi: 10.7554/eLife.12217.

17.

Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses.

Neher RA, Bedford T, Daniels RS, Russell CA, Shraiman BI.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):E1701-9. doi: 10.1073/pnas.1525578113. Epub 2016 Mar 7.

18.

Influenza B vaccine lineage selection--an optimized trivalent vaccine.

Mosterín Höpping A, Fonville JM, Russell CA, James S, Smith DJ.

Vaccine. 2016 Mar 18;34(13):1617-1622. doi: 10.1016/j.vaccine.2016.01.042. Epub 2016 Feb 16.

19.

Dengue viruses cluster antigenically but not as discrete serotypes.

Katzelnick LC, Fonville JM, Gromowski GD, Bustos Arriaga J, Green A, James SL, Lau L, Montoya M, Wang C, VanBlargan LA, Russell CA, Thu HM, Pierson TC, Buchy P, Aaskov JG, Muñoz-Jordán JL, Vasilakis N, Gibbons RV, Tesh RB, Osterhaus AD, Fouchier RA, Durbin A, Simmons CP, Holmes EC, Harris E, Whitehead SS, Smith DJ.

Science. 2015 Sep 18;349(6254):1338-43. doi: 10.1126/science.aac5017.

20.

Global circulation patterns of seasonal influenza viruses vary with antigenic drift.

Bedford T, Riley S, Barr IG, Broor S, Chadha M, Cox NJ, Daniels RS, Gunasekaran CP, Hurt AC, Kelso A, Klimov A, Lewis NS, Li X, McCauley JW, Odagiri T, Potdar V, Rambaut A, Shu Y, Skepner E, Smith DJ, Suchard MA, Tashiro M, Wang D, Xu X, Lemey P, Russell CA.

Nature. 2015 Jul 9;523(7559):217-20. doi: 10.1038/nature14460. Epub 2015 Jun 8.

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