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Items: 1 to 20 of 33

1.

The human iron-proteome.

Andreini C, Putignano V, Rosato A, Banci L.

Metallomics. 2018 Sep 19;10(9):1223-1231. doi: 10.1039/c8mt00146d.

PMID:
30095136
2.

Differential Effects of Iron, Zinc, and Copper on Dictyostelium discoideum Cell Growth and Resistance to Legionella pneumophila.

Buracco S, Peracino B, Andreini C, Bracco E, Bozzaro S.

Front Cell Infect Microbiol. 2018 Jan 11;7:536. doi: 10.3389/fcimb.2017.00536. eCollection 2017.

3.

To what extent do structural changes in catalytic metal sites affect enzyme function?

Valasatava Y, Rosato A, Furnham N, Thornton JM, Andreini C.

J Inorg Biochem. 2018 Feb;179:40-53. doi: 10.1016/j.jinorgbio.2017.11.002. Epub 2017 Nov 8.

4.

MetalPDB in 2018: a database of metal sites in biological macromolecular structures.

Putignano V, Rosato A, Banci L, Andreini C.

Nucleic Acids Res. 2018 Jan 4;46(D1):D459-D464. doi: 10.1093/nar/gkx989.

5.

Identification of the zinc, copper and cadmium metalloproteome of the protozoon Tetrahymena thermophila by systematic bioinformatics.

Chasapis CT, Andreini C, Georgiopolou AK, Stefanidou ME, Vlamis-Gardikas A.

Arch Microbiol. 2017 Oct;199(8):1141-1149. doi: 10.1007/s00203-017-1385-y. Epub 2017 May 6.

PMID:
28478602
6.

The Relationship between Environmental Dioxygen and Iron-Sulfur Proteins Explored at the Genome Level.

Andreini C, Rosato A, Banci L.

PLoS One. 2017 Jan 30;12(1):e0171279. doi: 10.1371/journal.pone.0171279. eCollection 2017.

7.

MetalPredator: a web server to predict iron-sulfur cluster binding proteomes.

Valasatava Y, Rosato A, Banci L, Andreini C.

Bioinformatics. 2016 Sep 15;32(18):2850-2. doi: 10.1093/bioinformatics/btw238. Epub 2016 Jun 6.

PMID:
27273670
8.

Minimal Functional Sites in Metalloproteins and Their Usage in Structural Bioinformatics.

Rosato A, Valasatava Y, Andreini C.

Int J Mol Sci. 2016 May 4;17(5). pii: E671. doi: 10.3390/ijms17050671. Review.

9.

Exploiting Bacterial Operons To Illuminate Human Iron-Sulfur Proteins.

Andreini C, Banci L, Rosato A.

J Proteome Res. 2016 Apr 1;15(4):1308-22. doi: 10.1021/acs.jproteome.6b00045. Epub 2016 Mar 2.

PMID:
26889782
10.

Hidden relationships between metalloproteins unveiled by structural comparison of their metal sites.

Valasatava Y, Andreini C, Rosato A.

Sci Rep. 2015 Mar 30;5:9486. doi: 10.1038/srep09486.

11.

MetalS(3), a database-mining tool for the identification of structurally similar metal sites.

Valasatava Y, Rosato A, Cavallaro G, Andreini C.

J Biol Inorg Chem. 2014 Aug;19(6):937-45. doi: 10.1007/s00775-014-1128-3. Epub 2014 Apr 4.

PMID:
24699831
12.

MetalS2: a tool for the structural alignment of minimal functional sites in metal-binding proteins and nucleic acids.

Andreini C, Cavallaro G, Rosato A, Valasatava Y.

J Chem Inf Model. 2013 Nov 25;53(11):3064-75. doi: 10.1021/ci400459w. Epub 2013 Oct 28.

PMID:
24117467
13.

MetalPDB: a database of metal sites in biological macromolecular structures.

Andreini C, Cavallaro G, Lorenzini S, Rosato A.

Nucleic Acids Res. 2013 Jan;41(Database issue):D312-9. doi: 10.1093/nar/gks1063. Epub 2012 Nov 15.

14.

HIV-1 tat promotes integrin-mediated HIV transmission to dendritic cells by binding Env spikes and competes neutralization by anti-HIV antibodies.

Monini P, Cafaro A, Srivastava IK, Moretti S, Sharma VA, Andreini C, Chiozzini C, Ferrantelli F, Cossut MR, Tripiciano A, Nappi F, Longo O, Bellino S, Picconi O, Fanales-Belasio E, Borsetti A, Toschi E, Schiavoni I, Bacigalupo I, Kan E, Sernicola L, Maggiorella MT, Montin K, Porcu M, Leone P, Leone P, Collacchi B, Palladino C, Ridolfi B, Falchi M, Macchia I, Ulmer JB, Buttò S, Sgadari C, Magnani M, Federico MP, Titti F, Banci L, Dallocchio F, Rappuoli R, Ensoli F, Barnett SW, Garaci E, Ensoli B.

PLoS One. 2012;7(11):e48781. doi: 10.1371/journal.pone.0048781. Epub 2012 Nov 13.

15.

FindGeo: a tool for determining metal coordination geometry.

Andreini C, Cavallaro G, Lorenzini S.

Bioinformatics. 2012 Jun 15;28(12):1658-60. doi: 10.1093/bioinformatics/bts246. Epub 2012 May 3.

PMID:
22556364
16.

A bioinformatics view of zinc enzymes.

Andreini C, Bertini I.

J Inorg Biochem. 2012 Jun;111:150-6. doi: 10.1016/j.jinorgbio.2011.11.020. Epub 2011 Dec 2.

PMID:
22209023
17.

MACiE: exploring the diversity of biochemical reactions.

Holliday GL, Andreini C, Fischer JD, Rahman SA, Almonacid DE, Williams ST, Pearson WR.

Nucleic Acids Res. 2012 Jan;40(Database issue):D783-9. doi: 10.1093/nar/gkr799. Epub 2011 Nov 3.

18.

Minimal functional sites allow a classification of zinc sites in proteins.

Andreini C, Bertini I, Cavallaro G.

PLoS One. 2011;6(10):e26325. doi: 10.1371/journal.pone.0026325. Epub 2011 Oct 17.

19.

A simple protocol for the comparative analysis of the structure and occurrence of biochemical pathways across superkingdoms.

Andreini C, Bertini I, Cavallaro G, Decaria L, Rosato A.

J Chem Inf Model. 2011 Mar 28;51(3):730-8. doi: 10.1021/ci100392q. Epub 2011 Mar 10.

PMID:
21388232
20.

Metalloproteomes: a bioinformatic approach.

Andreini C, Bertini I, Rosato A.

Acc Chem Res. 2009 Oct 20;42(10):1471-9. doi: 10.1021/ar900015x. Review.

PMID:
19697929

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