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Items: 1 to 20 of 60

1.

Comparison and integration of computational methods for deleterious synonymous mutation prediction.

Cheng N, Li M, Zhao L, Zhang B, Yang Y, Zheng CH, Xia J.

Brief Bioinform. 2019 Jun 3. pii: bbz047. doi: 10.1093/bib/bbz047. [Epub ahead of print]

PMID:
31157880
2.

A feature-based approach to predict hot spots in protein-DNA binding interfaces.

Zhang S, Zhao L, Zheng CH, Xia J.

Brief Bioinform. 2019 Apr 8. pii: bbz037. doi: 10.1093/bib/bbz037. [Epub ahead of print]

PMID:
30957840
3.

Supervised Discriminative Sparse PCA for Com-Characteristic Gene Selection and Tumor Classification on Multiview Biological Data.

Feng CM, Xu Y, Liu JX, Gao YL, Zheng CH.

IEEE Trans Neural Netw Learn Syst. 2019 Feb 22. doi: 10.1109/TNNLS.2019.2893190. [Epub ahead of print]

PMID:
30802874
4.

Dual-network sparse graph regularized matrix factorization for predicting miRNA-disease associations.

Gao MM, Cui Z, Gao YL, Liu JX, Zheng CH.

Mol Omics. 2019 Apr 1;15(2):130-137. doi: 10.1039/c8mo00244d. Epub 2019 Feb 6.

PMID:
30723850
5.

Computational identification of deleterious synonymous variants in human genomes using a feature-based approach.

Shi F, Yao Y, Bin Y, Zheng CH, Xia J.

BMC Med Genomics. 2019 Jan 31;12(Suppl 1):12. doi: 10.1186/s12920-018-0455-6.

6.

A Random Walk Based Cluster Ensemble Approach for Data Integration and Cancer Subtyping.

Yang C, Wang YT, Zheng CH.

Genes (Basel). 2019 Jan 18;10(1). pii: E66. doi: 10.3390/genes10010066.

7.

Integrative graph regularized matrix factorization for drug-pathway associations analysis.

Dai LY, Zheng CH, Liu JX, Zhu R, Yuan SS, Wang J, Kong XZ.

Comput Biol Chem. 2019 Feb;78:474-480. doi: 10.1016/j.compbiolchem.2018.11.026. Epub 2018 Dec 8.

PMID:
30581072
8.

A Dynamic Scale-Free Network Particle Swarm Optimization for Extracting Features on Multi-Omics Data.

Li H, Li SJ, Shang J, Liu JX, Zheng CH.

J Comput Biol. 2018 Nov 29. doi: 10.1089/cmb.2018.0185. [Epub ahead of print]

PMID:
30495971
9.

Introducing Heuristic Information into Ant Colony Optimization Algorithm for Identifying Epistasis.

Sun Y, Wang X, Shang J, Liu JX, Zheng CH, Lei X.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Nov 5. doi: 10.1109/TCBB.2018.2879673. [Epub ahead of print]

PMID:
30403637
10.

Approximate sparse spectral clustering based on local information maintenance for hyperspectral image classification.

Yan Q, Ding Y, Zhang JJ, Xun LN, Zheng CH.

PLoS One. 2018 Aug 17;13(8):e0202161. doi: 10.1371/journal.pone.0202161. eCollection 2018.

11.

A Mixed-Norm Laplacian Regularized Low-Rank Representation Method for Tumor Samples Clustering.

Wang J, Liu JX, Zheng CH, Wang YX, Kong XZ, Wen CG.

IEEE/ACM Trans Comput Biol Bioinform. 2019 Jan-Feb;16(1):172-182. doi: 10.1109/TCBB.2017.2769647. Epub 2017 Nov 3.

PMID:
29990217
12.

Identifying drug-pathway association pairs based on L2,1-integrative penalized matrix decomposition.

Liu JX, Wang DQ, Zheng CH, Gao YL, Wu SS, Shang JL.

BMC Syst Biol. 2017 Dec 14;11(Suppl 6):119. doi: 10.1186/s12918-017-0480-7.

13.

ndmaSNF: cancer subtype discovery based on integrative framework assisted by network diffusion model.

Yang C, Ge SG, Zheng CH.

Oncotarget. 2017 Oct 6;8(51):89021-89032. doi: 10.18632/oncotarget.21643. eCollection 2017 Oct 24.

14.

epiACO - a method for identifying epistasis based on ant Colony optimization algorithm.

Sun Y, Shang J, Liu JX, Li S, Zheng CH.

BioData Min. 2017 Jul 6;10:23. doi: 10.1186/s13040-017-0143-7. eCollection 2017.

15.

Identifying drug-pathway association pairs based on L1L2,1-integrative penalized matrix decomposition.

Wang DQ, Gao YL, Liu JX, Zheng CH, Kong XZ.

Oncotarget. 2017 Jul 18;8(29):48075-48085. doi: 10.18632/oncotarget.18254.

16.

Robust and Efficient Biomolecular Clustering of Tumor Based on ${p}$ -Norm Singular Value Decomposition.

Kong XZ, Liu JX, Zheng CH, Hou MX, Wang J.

IEEE Trans Nanobioscience. 2017 Jul;16(5):341-348. doi: 10.1109/TNB.2017.2705983. Epub 2017 May 18.

PMID:
28541216
17.

PCA Based on Graph Laplacian Regularization and P-Norm for Gene Selection and Clustering.

Feng CM, Gao YL, Liu JX, Zheng CH, Yu J.

IEEE Trans Nanobioscience. 2017 Jun;16(4):257-265. doi: 10.1109/TNB.2017.2690365. Epub 2017 Mar 31.

PMID:
28371780
18.

Regularized Non-Negative Matrix Factorization for Identifying Differentially Expressed Genes and Clustering Samples: A Survey.

Liu JX, Wang D, Gao YL, Zheng CH, Xu Y, Yu J.

IEEE/ACM Trans Comput Biol Bioinform. 2018 May-Jun;15(3):974-987. doi: 10.1109/TCBB.2017.2665557. Epub 2017 Feb 7.

PMID:
28186906
19.

LNDriver: identifying driver genes by integrating mutation and expression data based on gene-gene interaction network.

Wei PJ, Zhang D, Xia J, Zheng CH.

BMC Bioinformatics. 2016 Dec 23;17(Suppl 17):467. doi: 10.1186/s12859-016-1332-y.

20.

Cancer Subtype Discovery Based on Integrative Model of Multigenomic Data.

Ge SG, Xia J, Sha W, Zheng CH.

IEEE/ACM Trans Comput Biol Bioinform. 2017 Sep-Oct;14(5):1115-1121. doi: 10.1109/TCBB.2016.2621769. Epub 2016 Oct 26.

PMID:
28113782

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