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Items: 1 to 20 of 58

1.

The evolution of logic circuits for the purpose of protein contact map prediction.

Chapman SD, Adami C, Wilke CO, B Kc D.

PeerJ. 2017 Apr 18;5:e3139. doi: 10.7717/peerj.3139. eCollection 2017.

2.

Shared Information between Residues Is Sufficient to Detect Pairwise Epistasis in a Protein.

Gupta A, Adami C.

PLoS Genet. 2016 Dec 22;12(12):e1006471. doi: 10.1371/journal.pgen.1006471. eCollection 2016 Dec. No abstract available.

3.

Different Evolutionary Paths to Complexity for Small and Large Populations of Digital Organisms.

LaBar T, Adami C.

PLoS Comput Biol. 2016 Dec 6;12(12):e1005066. doi: 10.1371/journal.pcbi.1005066. eCollection 2016 Dec.

4.

A genome wide dosage suppressor network reveals genomic robustness.

Patra B, Kon Y, Yadav G, Sevold AW, Frumkin JP, Vallabhajosyula RR, Hintze A, Østman B, Schossau J, Bhan A, Marzolf B, Tamashiro JK, Kaur A, Baliga NS, Grayhack EJ, Adami C, Galas DJ, Raval A, Phizicky EM, Ray A.

Nucleic Acids Res. 2017 Jan 9;45(1):255-270. doi: 10.1093/nar/gkw1148. Epub 2016 Nov 29.

5.

The reasonable effectiveness of agent-based simulations in evolutionary game theory: Reply to comments on "Evolutionary game theory using agent-based methods".

Adami C, Schossau J, Hintze A.

Phys Life Rev. 2016 Dec;19:38-42. doi: 10.1016/j.plrev.2016.11.005. Epub 2016 Nov 15. No abstract available.

PMID:
27876345
6.

Evolvability Tradeoffs in Emergent Digital Replicators.

LaBar T, Hintze A, Adami C.

Artif Life. 2016 Fall;22(4):483-498. Epub 2016 Nov 8.

PMID:
27824499
7.

Evolutionary game theory using agent-based methods.

Adami C, Schossau J, Hintze A.

Phys Life Rev. 2016 Dec;19:1-26. doi: 10.1016/j.plrev.2016.08.015. Epub 2016 Aug 31. Review.

8.

Evolution of Genome Size in Asexual Digital Organisms.

Gupta A, LaBar T, Miyagi M, Adami C.

Sci Rep. 2016 May 16;6:25786. doi: 10.1038/srep25786.

9.

Evolution of Swarming Behavior Is Shaped by How Predators Attack.

Olson RS, Knoester DB, Adami C.

Artif Life. 2016 Summer;22(3):299-318. doi: 10.1162/ARTL_a_00206. Epub 2016 May 3.

PMID:
27139941
10.

Strong Selection Significantly Increases Epistatic Interactions in the Long-Term Evolution of a Protein.

Gupta A, Adami C.

PLoS Genet. 2016 Mar 30;12(3):e1005960. doi: 10.1371/journal.pgen.1005960. eCollection 2016 Mar.

11.

One-Shot Decoupling and Page Curves from a Dynamical Model for Black Hole Evaporation.

Brádler K, Adami C.

Phys Rev Lett. 2016 Mar 11;116(10):101301. doi: 10.1103/PhysRevLett.116.101301. Epub 2016 Mar 8.

PMID:
27015471
12.

What is information?†.

Adami C.

Philos Trans A Math Phys Eng Sci. 2016 Mar 13;374(2063). pii: 20150230. doi: 10.1098/rsta.2015.0230. Review.

13.

Exploring the evolution of a trade-off between vigilance and foraging in group-living organisms.

Olson RS, Haley PB, Dyer FC, Adami C.

R Soc Open Sci. 2015 Sep 16;2(9):150135. doi: 10.1098/rsos.150135. eCollection 2015 Sep.

14.

Differentially-Expressed Pseudogenes in HIV-1 Infection.

Gupta A, Brown CT, Zheng YH, Adami C.

Viruses. 2015 Sep 29;7(10):5191-205. doi: 10.3390/v7102869.

15.

Discovery and information-theoretic characterization of transcription factor binding sites that act cooperatively.

Clifford J, Adami C.

Phys Biol. 2015 Sep 2;12(5):056004. doi: 10.1088/1478-3975/12/5/056004.

PMID:
26331781
16.

Information-Theoretic Considerations Concerning the Origin of Life.

Adami C.

Orig Life Evol Biosph. 2015 Sep;45(3):309-17. doi: 10.1007/s11084-015-9439-0. Epub 2015 Jun 11.

PMID:
26062909
17.

Punishment in public goods games leads to meta-stable phase transitions and hysteresis.

Hintze A, Adami C.

Phys Biol. 2015 Jun 2;12(4):046005. doi: 10.1088/1478-3975/12/4/046005.

PMID:
26031571
18.

Artificial intelligence: Robots with instincts.

Adami C.

Nature. 2015 May 28;521(7553):426-7. doi: 10.1038/521426a. No abstract available.

PMID:
26017437
19.

Risk sensitivity as an evolutionary adaptation.

Hintze A, Olson RS, Adami C, Hertwig R.

Sci Rep. 2015 Feb 4;5:8242. doi: 10.1038/srep08242.

20.

Evolution of integrated causal structures in animats exposed to environments of increasing complexity.

Albantakis L, Hintze A, Koch C, Adami C, Tononi G.

PLoS Comput Biol. 2014 Dec 18;10(12):e1003966. doi: 10.1371/journal.pcbi.1003966. eCollection 2014 Dec.

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