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Items: 1 to 20 of 66

1.

Isolation and characterization of Akhmeta virus from wild caught rodents (Apodemus spp.) in Georgia.

Doty JB, Maghlakelidze G, Sikharulidze I, Tu SL, Morgan CN, Mauldin MR, Parkadze O, Kartskhia N, Turmanidze M, Matheny A, Davidson W, Tang S, Gao J, Li Y, Upton C, Carroll DS, Emerson GL, Nakazawa Y.

J Virol. 2019 Sep 25. pii: JVI.00966-19. doi: 10.1128/JVI.00966-19. [Epub ahead of print]

2.

Long term tapering versus standard prednisolone treatment for first episode of childhood nephrotic syndrome: phase III randomised controlled trial and economic evaluation.

Webb NJA, Woolley RL, Lambe T, Frew E, Brettell EA, Barsoum EN, Trompeter RS, Cummins C, Deeks JJ, Wheatley K, Ives NJ; PREDNOS Collaborative Group.

BMJ. 2019 May 23;365:l1800. doi: 10.1136/bmj.l1800.

3.

Bioinformatics for Analysis of Poxvirus Genomes.

Tu SL, Upton C.

Methods Mol Biol. 2019;2023:29-62. doi: 10.1007/978-1-4939-9593-6_2.

PMID:
31240669
4.

Base-By-Base Version 3: New Comparative Tools for Large Virus Genomes.

Tu SL, Staheli JP, McClay C, McLeod K, Rose TM, Upton C.

Viruses. 2018 Nov 15;10(11). pii: E637. doi: 10.3390/v10110637.

5.

Complete genome sequence of a novel sea otterpox virus.

Jacob JM, Subramaniam K, Tu SL, Nielsen O, Tuomi PA, Upton C, Waltzek TB.

Virus Genes. 2018 Dec;54(6):756-767. doi: 10.1007/s11262-018-1594-8. Epub 2018 Sep 17.

PMID:
30225673
6.

Bioinformatic Approaches for Comparative Analysis of Viruses.

Amgarten D, Upton C.

Methods Mol Biol. 2018;1704:401-417. doi: 10.1007/978-1-4939-7463-4_15.

PMID:
29277875
7.

Complete genomic characterisation of two novel poxviruses (WKPV and EKPV) from western and eastern grey kangaroos.

Bennett M, Tu SL, Upton C, McArtor C, Gillett A, Laird T, O'Dea M.

Virus Res. 2017 Oct 15;242:106-121. doi: 10.1016/j.virusres.2017.09.016. Epub 2017 Sep 27.

PMID:
28958947
8.

Re-Assembly and Analysis of an Ancient Variola Virus Genome.

Smithson C, Imbery J, Upton C.

Viruses. 2017 Sep 8;9(9). pii: E253. doi: 10.3390/v9090253.

9.

Two novel poxviruses with unusual genome rearrangements: NY_014 and Murmansk.

Smithson C, Meyer H, Gigante CM, Gao J, Zhao H, Batra D, Damon I, Upton C, Li Y.

Virus Genes. 2017 Dec;53(6):883-897. doi: 10.1007/s11262-017-1501-8. Epub 2017 Jul 31.

PMID:
28762208
10.

Characterization of Eptesipoxvirus, a novel poxvirus from a microchiropteran bat.

Tu SL, Nakazawa Y, Gao J, Wilkins K, Gallardo-Romero N, Li Y, Emerson GL, Carroll DS, Upton C.

Virus Genes. 2017 Dec;53(6):856-867. doi: 10.1007/s11262-017-1485-4. Epub 2017 Jul 6.

11.

Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages.

Amgarten D, Martins LF, Lombardi KC, Antunes LP, de Souza APS, Nicastro GG, Kitajima EW, Quaggio RB, Upton C, Setubal JC, da Silva AM.

BMC Genomics. 2017 May 4;18(1):346. doi: 10.1186/s12864-017-3729-z.

12.

Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.).

Sarker S, Das S, Lavers JL, Hutton I, Helbig K, Imbery J, Upton C, Raidal SR.

BMC Genomics. 2017 Apr 13;18(1):298. doi: 10.1186/s12864-017-3680-z.

13.

The genomes of three North American orthopoxviruses.

Smithson C, Tang N, Sammons S, Frace M, Batra D, Li Y, Emerson GL, Carroll DS, Upton C.

Virus Genes. 2017 Feb;53(1):21-34. doi: 10.1007/s11262-016-1388-9. Epub 2016 Sep 9.

PMID:
27613417
14.

Genomic characterization of a novel poxvirus from a flying fox: evidence for a new genus?

O'Dea MA, Tu SL, Pang S, De Ridder T, Jackson B, Upton C.

J Gen Virol. 2016 Sep;97(9):2363-2375. doi: 10.1099/jgv.0.000538. Epub 2016 Jul 7.

PMID:
27389615
15.

Novel Poxvirus Infection in an Immune Suppressed Patient.

Lakis NS, Li Y, Abraham JL, Upton C, Blair DC, Smith S, Zhao H, Damon IK.

Clin Infect Dis. 2015 Nov 15;61(10):1543-8. doi: 10.1093/cid/civ643. Epub 2015 Aug 3.

PMID:
26243783
16.

Genome sequence and comparative virulence of raccoonpox virus: the first North American poxvirus sequence.

Fleischauer C, Upton C, Victoria J, Jones GJ, Roper RL.

J Gen Virol. 2015 Sep;96(9):2806-21. doi: 10.1099/vir.0.000202. Epub 2015 May 28.

PMID:
26023150
17.

Comparative analysis of the complete genome sequences of Kenyan African swine fever virus isolates within p72 genotypes IX and X.

Bishop RP, Fleischauer C, de Villiers EP, Okoth EA, Arias M, Gallardo C, Upton C.

Virus Genes. 2015 Apr;50(2):303-9. doi: 10.1007/s11262-014-1156-7. Epub 2015 Feb 3.

PMID:
25645905
18.

Related strains of African swine fever virus with different virulence: genome comparison and analysis.

Portugal R, Coelho J, Höper D, Little NS, Smithson C, Upton C, Martins C, Leitão A, Keil GM.

J Gen Virol. 2015 Feb;96(Pt 2):408-19. doi: 10.1099/vir.0.070508-0. Epub 2014 Nov 18.

PMID:
25406173
19.

Suffix tree searcher: exploration of common substrings in large DNA sequence sets.

Minkley D, Whitney MJ, Lin SH, Barsky MG, Kelly C, Upton C.

BMC Res Notes. 2014 Jul 23;7:466. doi: 10.1186/1756-0500-7-466.

20.

Depression and anxiety in adolescents and adults with cystic fibrosis in the UK: a cross-sectional study.

Duff AJ, Abbott J, Cowperthwaite C, Sumner C, Hurley MA, Quittner A; TIDES-UK Group.

J Cyst Fibros. 2014 Dec;13(6):745-53. doi: 10.1016/j.jcf.2014.02.010. Epub 2014 Mar 15.

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