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Items: 1 to 20 of 72


Identification and Classification for the Lactobacillus casei Group.

Huang CH, Li SW, Huang L, Watanabe K.

Front Microbiol. 2018 Aug 22;9:1974. doi: 10.3389/fmicb.2018.01974. eCollection 2018.


A well-resolved fern nuclear phylogeny reveals the evolution history of numerous transcription factor families.

Qi X, Kuo LY, Guo C, Li H, Li Z, Qi J, Wang L, Hu Y, Xiang J, Zhang C, Guo J, Huang CH, Ma H.

Mol Phylogenet Evol. 2018 Oct;127:961-977. doi: 10.1016/j.ympev.2018.06.043. Epub 2018 Jul 5.


Hazardous impacts of silver nanoparticles on mouse oocyte maturation and fertilization and fetal development through induction of apoptotic processes.

Huang CH, Yeh JM, Chan WH.

Environ Toxicol. 2018 Jul 2. doi: 10.1002/tox.22590. [Epub ahead of print]


Draft Genome Sequence of Clostridium sp. Strain chh4-2 Isolated from Human Feces.

Huang CH, Liou JS, Wang CL, Huang L.

Genome Announc. 2018 Feb 22;6(8). pii: e00070-18. doi: 10.1128/genomeA.00070-18.


Polyphasic characterization of a novel species in the Lactobacillus casei group from cow manure of Taiwan: Description of L. chiayiensis sp. nov.

Huang CH, Liou JS, Lee AY, Tseng M, Miyashita M, Huang L, Watanabe K.

Syst Appl Microbiol. 2018 Jul;41(4):270-278. doi: 10.1016/j.syapm.2018.01.008. Epub 2018 Feb 7.


MDD-carb: a combinatorial model for the identification of protein carbonylation sites with substrate motifs.

Kao HJ, Weng SL, Huang KY, Kaunang FJ, Hsu JB, Huang CH, Lee TY.

BMC Syst Biol. 2017 Dec 21;11(Suppl 7):137. doi: 10.1186/s12918-017-0511-4.


Berberine impairs embryonic development in vitro and in vivo through oxidative stress-mediated apoptotic processes.

Huang CH, Huang ZW, Ho FM, Chan WH.

Environ Toxicol. 2018 Mar;33(3):280-294. doi: 10.1002/tox.22515. Epub 2017 Nov 23.


Rhein Induces Oxidative Stress and Apoptosis in Mouse Blastocysts and Has Immunotoxic Effects during Embryonic Development.

Huang CH, Chan WH.

Int J Mol Sci. 2017 Sep 20;18(9). pii: E2018. doi: 10.3390/ijms18092018.


MDD-Palm: Identification of protein S-palmitoylation sites with substrate motifs based on maximal dependence decomposition.

Weng SL, Kao HJ, Huang CH, Lee TY.

PLoS One. 2017 Jun 29;12(6):e0179529. doi: 10.1371/journal.pone.0179529. eCollection 2017.


Investigation and identification of protein carbonylation sites based on position-specific amino acid composition and physicochemical features.

Weng SL, Huang KY, Kaunang FJ, Huang CH, Kao HJ, Chang TH, Wang HY, Lu JJ, Lee TY.

BMC Bioinformatics. 2017 Mar 14;18(Suppl 3):66. doi: 10.1186/s12859-017-1472-8.


Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication.

Xiang Y, Huang CH, Hu Y, Wen J, Li S, Yi T, Chen H, Xiang J, Ma H.

Mol Biol Evol. 2017 Feb 1;34(2):262-281. doi: 10.1093/molbev/msw242. Erratum in: Mol Biol Evol. 2017 Apr 1;34(4):1026.


Establishment and application of an analytical in-house database (IHDB) for rapid discrimination of Bacillus subtilis group (BSG) using whole-cell MALDI-TOF MS technology.

Huang CH, Huang L, Chang MT, Chen KL.

Mol Cell Probes. 2016 Oct;30(5):312-319. doi: 10.1016/j.mcp.2016.08.002. Epub 2016 Aug 6.


Multiple Polyploidization Events across Asteraceae with Two Nested Events in the Early History Revealed by Nuclear Phylogenomics.

Huang CH, Zhang C, Liu M, Hu Y, Gao T, Qi J, Ma H.

Mol Biol Evol. 2016 Nov;33(11):2820-2835. Epub 2016 Sep 7.


A New Scheme to Characterize and Identify Protein Ubiquitination Sites.

Nguyen VN, Huang KY, Huang CH, Lai KR, Lee TY.

IEEE/ACM Trans Comput Biol Bioinform. 2017 Mar-Apr;14(2):393-403. doi: 10.1109/TCBB.2016.2520939. Epub 2016 Feb 8.


UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines.

Huang CH, Su MG, Kao HJ, Jhong JH, Weng SL, Lee TY.

BMC Syst Biol. 2016 Jan 11;10 Suppl 1:6. doi: 10.1186/s12918-015-0246-z.


A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs.

Kao HJ, Huang CH, Bretaña NA, Lu CT, Huang KY, Weng SL, Lee TY.

BMC Bioinformatics. 2015;16 Suppl 18:S10. doi: 10.1186/1471-2105-16-S18-S10. Epub 2015 Dec 9.


Hexosamine-Induced TGF-β Signaling and Osteogenic Differentiation of Dental Pulp Stem Cells Are Dependent on N-Acetylglucosaminyltransferase V.

Chen YJ, Yao CC, Huang CH, Chang HH, Young TH.

Biomed Res Int. 2015;2015:924397. doi: 10.1155/2015/924397. Epub 2015 Oct 25.


Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution.

Huang CH, Sun R, Hu Y, Zeng L, Zhang N, Cai L, Zhang Q, Koch MA, Al-Shehbaz I, Edger PP, Pires JC, Tan DY, Zhong Y, Ma H.

Mol Biol Evol. 2016 Feb;33(2):394-412. doi: 10.1093/molbev/msv226. Epub 2015 Oct 29.

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