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Items: 11

1.

Exposure of HepaRG Cells to Sodium Saccharin Underpins the Importance of Including Non-Hepatotoxic Compounds When Investigating Toxicological Modes of Action Using Metabolomics.

Cuykx M, Beirnaert C, Rodrigues RM, Laukens K, Vanhaecke T, Covaci A.

Metabolites. 2019 Nov 4;9(11). pii: E265. doi: 10.3390/metabo9110265.

2.

Untargeted liquid chromatography-mass spectrometry metabolomics to assess drug-induced cholestatic features in HepaRG® cells.

Cuykx M, Beirnaert C, Rodrigues RM, Laukens K, Vanhaecke T, Covaci A.

Toxicol Appl Pharmacol. 2019 Sep 15;379:114666. doi: 10.1016/j.taap.2019.114666. Epub 2019 Jul 16.

PMID:
31323262
3.

The use of plasma donor-derived, cell-free DNA to monitor acute rejection after kidney transplantation.

Gielis EM, Ledeganck KJ, Dendooven A, Meysman P, Beirnaert C, Laukens K, De Schrijver J, Van Laecke S, Van Biesen W, Emonds MP, De Winter BY, Bosmans JL, Del Favero J, Abramowicz D.

Nephrol Dial Transplant. 2019 May 18. pii: gfz091. doi: 10.1093/ndt/gfz091. [Epub ahead of print]

PMID:
31106364
4.

Using Expert Driven Machine Learning to Enhance Dynamic Metabolomics Data Analysis.

Beirnaert C, Peeters L, Meysman P, Bittremieux W, Foubert K, Custers D, Van der Auwera A, Cuykx M, Pieters L, Covaci A, Laukens K.

Metabolites. 2019 Mar 20;9(3). pii: E54. doi: 10.3390/metabo9030054.

5.

Revelation of the metabolic pathway of hederacoside C using an innovative data analysis strategy for dynamic multiclass biotransformation experiments.

Peeters L, Beirnaert C, Van der Auwera A, Bijttebier S, De Bruyne T, Laukens K, Pieters L, Hermans N, Foubert K.

J Chromatogr A. 2019 Jun 21;1595:240-247. doi: 10.1016/j.chroma.2019.02.055. Epub 2019 Feb 25.

PMID:
30833026
6.

Plasma donor-derived cell-free DNA kinetics after kidney transplantation using a single tube multiplex PCR assay.

Gielis EM, Beirnaert C, Dendooven A, Meysman P, Laukens K, De Schrijver J, Van Laecke S, Van Biesen W, Emonds MP, De Winter BY, Bosmans JL, Del Favero J, Abramowicz D, Ledeganck KJ.

PLoS One. 2018 Dec 6;13(12):e0208207. doi: 10.1371/journal.pone.0208207. eCollection 2018.

7.

speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification.

Beirnaert C, Meysman P, Vu TN, Hermans N, Apers S, Pieters L, Covaci A, Laukens K.

PLoS Comput Biol. 2018 Mar 1;14(3):e1006018. doi: 10.1371/journal.pcbi.1006018. eCollection 2018 Mar.

8.

The future of metabolomics in ELIXIR.

van Rijswijk M, Beirnaert C, Caron C, Cascante M, Dominguez V, Dunn WB, Ebbels TMD, Giacomoni F, Gonzalez-Beltran A, Hankemeier T, Haug K, Izquierdo-Garcia JL, Jimenez RC, Jourdan F, Kale N, Klapa MI, Kohlbacher O, Koort K, Kultima K, Le Corguillé G, Moreno P, Moschonas NK, Neumann S, O'Donovan C, Reczko M, Rocca-Serra P, Rosato A, Salek RM, Sansone SA, Satagopam V, Schober D, Shimmo R, Spicer RA, Spjuth O, Thévenot EA, Viant MR, Weber RJM, Willighagen EL, Zanetti G, Steinbeck C.

Version 2. F1000Res. 2017 Sep 6 [revised 2017 Jan 1];6. pii: ELIXIR-1649. doi: 10.12688/f1000research.12342.2. eCollection 2017.

9.

On the feasibility of mining CD8+ T cell receptor patterns underlying immunogenic peptide recognition.

De Neuter N, Bittremieux W, Beirnaert C, Cuypers B, Mrzic A, Moris P, Suls A, Van Tendeloo V, Ogunjimi B, Laukens K, Meysman P.

Immunogenetics. 2018 Mar;70(3):159-168. doi: 10.1007/s00251-017-1023-5. Epub 2017 Aug 4.

PMID:
28779185
10.

Tailored liquid chromatography-mass spectrometry analysis improves the coverage of the intracellular metabolome of HepaRG cells.

Cuykx M, Negreira N, Beirnaert C, Van den Eede N, Rodrigues R, Vanhaecke T, Laukens K, Covaci A.

J Chromatogr A. 2017 Mar 3;1487:168-178. doi: 10.1016/j.chroma.2017.01.050. Epub 2017 Jan 23.

PMID:
28153450
11.

Asymmetric dyes align inside carbon nanotubes to yield a large nonlinear optical response.

Cambré S, Campo J, Beirnaert C, Verlackt C, Cool P, Wenseleers W.

Nat Nanotechnol. 2015 Mar;10(3):248-52. doi: 10.1038/nnano.2015.1. Epub 2015 Feb 2.

PMID:
25643253

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