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Items: 16

1.

Asian Citrus Psyllid Expression Profiles Suggest Candidatus Liberibacter Asiaticus-Mediated Alteration of Adult Nutrition and Metabolism, and of Nymphal Development and Immunity.

Vyas M, Fisher TW, He R, Nelson W, Yin G, Cicero JM, Willer M, Kim R, Kramer R, May GA, Crow JA, Soderlund CA, Gang DR, Brown JK.

PLoS One. 2015 Jun 19;10(6):e0130328. doi: 10.1371/journal.pone.0130328. eCollection 2015.

2.

Comparative proteomic analysis of developing rhizomes of the ancient vascular plant Equisetum hyemale and different monocot species.

Salvato F, Balbuena TS, Nelson W, Rao RS, He R, Soderlund CA, Gang DR, Thelen JJ.

J Proteome Res. 2015 Apr 3;14(4):1779-91. doi: 10.1021/pr501157w. Epub 2015 Mar 5.

PMID:
25716083
3.

Allele Workbench: transcriptome pipeline and interactive graphics for allele-specific expression.

Soderlund CA, Nelson WM, Goff SA.

PLoS One. 2014 Dec 26;9(12):e115740. doi: 10.1371/journal.pone.0115740. eCollection 2014.

4.

Comparison of potato and asian citrus psyllid adult and nymph transcriptomes identified vector transcripts with potential involvement in circulative, propagative liberibacter transmission.

Fisher TW, Vyas M, He R, Nelson W, Cicero JM, Willer M, Kim R, Kramer R, May GA, Crow JA, Soderlund CA, Gang DR, Brown JK.

Pathogens. 2014 Nov 3;3(4):875-907. doi: 10.3390/pathogens3040875.

5.

A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement.

He R, Salvato F, Park JJ, Kim MJ, Nelson W, Balbuena TS, Willer M, Crow JA, May GD, Soderlund CA, Thelen JJ, Gang DR.

BMC Plant Biol. 2014 Feb 12;14:46. doi: 10.1186/1471-2229-14-46.

6.

Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave.

Ortiz M, Legatzki A, Neilson JW, Fryslie B, Nelson WM, Wing RA, Soderlund CA, Pryor BM, Maier RM.

ISME J. 2014 Feb;8(2):478-91. doi: 10.1038/ismej.2013.159. Epub 2013 Sep 12.

7.

Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids.

Koo HJ, McDowell ET, Ma X, Greer KA, Kapteyn J, Xie Z, Descour A, Kim H, Yu Y, Kudrna D, Wing RA, Soderlund CA, Gang DR.

BMC Plant Biol. 2013 Feb 15;13:27. doi: 10.1186/1471-2229-13-27.

8.

Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ.

Ortiz M, Neilson JW, Nelson WM, Legatzki A, Byrne A, Yu Y, Wing RA, Soderlund CA, Pryor BM, Pierson LS 3rd, Maier RM.

Microb Ecol. 2013 Feb;65(2):371-83. doi: 10.1007/s00248-012-0143-6. Epub 2012 Dec 9.

PMID:
23224253
9.

Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile.

Neilson JW, Quade J, Ortiz M, Nelson WM, Legatzki A, Tian F, LaComb M, Betancourt JL, Wing RA, Soderlund CA, Maier RM.

Extremophiles. 2012 May;16(3):553-66. doi: 10.1007/s00792-012-0454-z. Epub 2012 Apr 18.

PMID:
22527047
10.

Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity.

He R, Kim MJ, Nelson W, Balbuena TS, Kim R, Kramer R, Crow JA, May GD, Thelen JJ, Soderlund CA, Gang DR.

Am J Bot. 2012 Feb;99(2):232-47. doi: 10.3732/ajb.1100429. Epub 2012 Feb 1.

11.

Comparative functional genomic analysis of Solanum glandular trichome types.

McDowell ET, Kapteyn J, Schmidt A, Li C, Kang JH, Descour A, Shi F, Larson M, Schilmiller A, An L, Jones AD, Pichersky E, Soderlund CA, Gang DR.

Plant Physiol. 2011 Jan;155(1):524-39. doi: 10.1104/pp.110.167114. Epub 2010 Nov 19.

12.

Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses.

Bowers JE, Arias MA, Asher R, Avise JA, Ball RT, Brewer GA, Buss RW, Chen AH, Edwards TM, Estill JC, Exum HE, Goff VH, Herrick KL, Steele CL, Karunakaran S, Lafayette GK, Lemke C, Marler BS, Masters SL, McMillan JM, Nelson LK, Newsome GA, Nwakanma CC, Odeh RN, Phelps CA, Rarick EA, Rogers CJ, Ryan SP, Slaughter KA, Soderlund CA, Tang H, Wing RA, Paterson AH.

Proc Natl Acad Sci U S A. 2005 Sep 13;102(37):13206-11. Epub 2005 Sep 2.

13.

Sequence composition and genome organization of maize.

Messing J, Bharti AK, Karlowski WM, Gundlach H, Kim HR, Yu Y, Wei F, Fuks G, Soderlund CA, Mayer KF, Wing RA.

Proc Natl Acad Sci U S A. 2004 Oct 5;101(40):14349-54. Epub 2004 Sep 23.

14.

Locating sequence on FPC maps and selecting a minimal tiling path.

Engler FW, Hatfield J, Nelson W, Soderlund CA.

Genome Res. 2003 Sep;13(9):2152-63. Epub 2003 Aug 12.

15.

Characterization of three maize bacterial artificial chromosome libraries toward anchoring of the physical map to the genetic map using high-density bacterial artificial chromosome filter hybridization.

Yim YS, Davis GL, Duru NA, Musket TA, Linton EW, Messing JW, McMullen MD, Soderlund CA, Polacco ML, Gardiner JM, Coe EH Jr.

Plant Physiol. 2002 Dec;130(4):1686-96.

16.

Genetic, physical, and informatics resources for maize. On the road to an integrated map.

Cone KC, McMullen MD, Bi IV, Davis GL, Yim YS, Gardiner JM, Polacco ML, Sanchez-Villeda H, Fang Z, Schroeder SG, Havermann SA, Bowers JE, Paterson AH, Soderlund CA, Engler FW, Wing RA, Coe EH Jr.

Plant Physiol. 2002 Dec;130(4):1598-605. Review. No abstract available.

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