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Items: 1 to 20 of 62


Comparison of ultraconserved elements (UCEs) to microsatellite markers for the study of avian hybrid zones: a test in Aphelocoma jays.

Vinciguerra NT, Tsai WLE, Faircloth BC, McCormack JE.

BMC Res Notes. 2019 Jul 24;12(1):456. doi: 10.1186/s13104-019-4481-z.


Earth history and the passerine superradiation.

Oliveros CH, Field DJ, Ksepka DT, Barker FK, Aleixo A, Andersen MJ, Alström P, Benz BW, Braun EL, Braun MJ, Bravo GA, Brumfield RT, Chesser RT, Claramunt S, Cracraft J, Cuervo AM, Derryberry EP, Glenn TC, Harvey MG, Hosner PA, Joseph L, Kimball RT, Mack AL, Miskelly CM, Peterson AT, Robbins MB, Sheldon FH, Silveira LF, Smith BT, White ND, Moyle RG, Faircloth BC.

Proc Natl Acad Sci U S A. 2019 Apr 16;116(16):7916-7925. doi: 10.1073/pnas.1813206116. Epub 2019 Apr 1.


Resolving Deep Nodes in an Ancient Radiation of Neotropical Fishes in the Presence of Conflicting Signals from Incomplete Lineage Sorting.

Alda F, Tagliacollo VA, Bernt MJ, Waltz BT, Ludt WB, Faircloth BC, Alfaro ME, Albert JS, Chakrabarty P.

Syst Biol. 2019 Jul 1;68(4):573-593. doi: 10.1093/sysbio/syy085.


Genome-wide signals of drift and local adaptation during rapid lineage divergence in a songbird.

Friis G, Fandos G, Zellmer AJ, McCormack JE, Faircloth BC, Milá B.

Mol Ecol. 2018 Dec;27(24):5137-5153. doi: 10.1111/mec.14946. Epub 2018 Dec 21.


Insight from an ultraconserved element bait set designed for hemipteran phylogenetics integrated with genomic resources.

Kieran TJ, Gordon ERL, Forthman M, Hoey-Chamberlain R, Kimball RT, Faircloth BC, Weirauch C, Glenn TC.

Mol Phylogenet Evol. 2019 Jan;130:297-303. doi: 10.1016/j.ympev.2018.10.026. Epub 2018 Oct 22.


What are the roles of taxon sampling and model fit in tests of cyto-nuclear discordance using avian mitogenomic data?

Tamashiro RA, White ND, Braun MJ, Faircloth BC, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2019 Jan;130:132-142. doi: 10.1016/j.ympev.2018.10.008. Epub 2018 Oct 12.


Ultraconserved elements (UCEs) illuminate the population genomics of a recent, high-latitude avian speciation event.

Winker K, Glenn TC, Faircloth BC.

PeerJ. 2018 Oct 5;6:e5735. doi: 10.7717/peerj.5735. eCollection 2018.


Correction: Ultraconserved elements (UCEs) resolve the phylogeny of Australasian smurf-weevils.

Van Dam MH, Lam AW, Sagata K, Gewa B, Laufa R, Balke M, Faircloth BC, Riedel A.

PLoS One. 2018 Sep 27;13(9):e0205049. doi: 10.1371/journal.pone.0205049. eCollection 2018.


Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements.

Andermann T, Fernandes AM, Olsson U, Töpel M, Pfeil B, Oxelman B, Aleixo A, Faircloth BC, Antonelli A.

Syst Biol. 2019 Jan 1;68(1):32-46. doi: 10.1093/sysbio/syy039.


Cultivation and genomics of the first freshwater SAR11 (LD12) isolate.

Henson MW, Lanclos VC, Faircloth BC, Thrash JC.

ISME J. 2018 Jun;12(7):1846-1860. doi: 10.1038/s41396-018-0092-2. Epub 2018 Mar 29.


Explosive diversification of marine fishes at the Cretaceous-Palaeogene boundary.

Alfaro ME, Faircloth BC, Harrington RC, Sorenson L, Friedman M, Thacker CE, Oliveros CH, Černý D, Near TJ.

Nat Ecol Evol. 2018 Apr;2(4):688-696. doi: 10.1038/s41559-018-0494-6. Epub 2018 Mar 12.


Ultraconserved elements (UCEs) resolve the phylogeny of Australasian smurf-weevils.

Van Dam MH, Lam AW, Sagata K, Gewa B, Laufa R, Balke M, Faircloth BC, Riedel A.

PLoS One. 2017 Nov 22;12(11):e0188044. doi: 10.1371/journal.pone.0188044. eCollection 2017. Erratum in: PLoS One. 2018 Sep 27;13(9):e0205049.


Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems.

Quattrini AM, Faircloth BC, Dueñas LF, Bridge TCL, Brugler MR, Calixto-Botía IF, DeLeo DM, Forêt S, Herrera S, Lee SMY, Miller DJ, Prada C, Rádis-Baptista G, Ramírez-Portilla C, Sánchez JA, Rodríguez E, McFadden CS.

Mol Ecol Resour. 2018 Mar;18(2):281-295. doi: 10.1111/1755-0998.12736. Epub 2017 Dec 6.


Conflicting Evolutionary Histories of the Mitochondrial and Nuclear Genomes in New World Myotis Bats.

Platt RN 2nd, Faircloth BC, Sullivan KAM, Kieran TJ, Glenn TC, Vandewege MW, Lee TE Jr, Baker RJ, Stevens RD, Ray DA.

Syst Biol. 2018 Mar 1;67(2):236-249. doi: 10.1093/sysbio/syx070.


Polyandry enhances offspring viability with survival costs to mothers only when mating exclusively with virgin males in Drosophila melanogaster.

Castrezana S, Faircloth BC, Bridges WC, Gowaty PA.

Ecol Evol. 2017 Aug 14;7(18):7515-7526. doi: 10.1002/ece3.3152. eCollection 2017 Sep.


Investigating Difficult Nodes in the Placental Mammal Tree with Expanded Taxon Sampling and Thousands of Ultraconserved Elements.

Esselstyn JA, Oliveros CH, Swanson MT, Faircloth BC.

Genome Biol Evol. 2017 Sep 1;9(9):2308-2321. doi: 10.1093/gbe/evx168.


Phylogenetic relationships of diurnal, phytotelm-breeding Melanophryniscus (Anura: Bufonidae) based on mitogenomic data.

Pie MR, Ströher PR, Belmonte-Lopes R, Bornschein MR, Ribeiro LF, Faircloth BC, McCormack JE.

Gene. 2017 Sep 10;628:194-199. doi: 10.1016/j.gene.2017.07.048. Epub 2017 Jul 15.


Phylogenomic analysis of Lake Malawi cichlid fishes: Further evidence that the three-stage model of diversification does not fit.

Hulsey CD, Zheng J, Faircloth BC, Meyer A, Alfaro ME.

Mol Phylogenet Evol. 2017 Sep;114:40-48. doi: 10.1016/j.ympev.2017.05.027. Epub 2017 Jun 1.


Dry habitats were crucibles of domestication in the evolution of agriculture in ants.

Branstetter MG, Ješovnik A, Sosa-Calvo J, Lloyd MW, Faircloth BC, Brady SG, Schultz TR.

Proc Biol Sci. 2017 Apr 12;284(1852). pii: 20170095. doi: 10.1098/rspb.2017.0095.


Phylogenomic Insights into the Evolution of Stinging Wasps and the Origins of Ants and Bees.

Branstetter MG, Danforth BN, Pitts JP, Faircloth BC, Ward PS, Buffington ML, Gates MW, Kula RR, Brady SG.

Curr Biol. 2017 Apr 3;27(7):1019-1025. doi: 10.1016/j.cub.2017.03.027.

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