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Items: 1 to 20 of 42

1.

Flexible regions govern promiscuous binding of IL-24 to receptors IL-20R1 and IL-22R1.

Zahradník J, Kolářová L, Peleg Y, Kolenko P, Svidenská S, Charnavets T, Unger T, Sussman JL, Schneider B.

FEBS J. 2019 Jun 1. doi: 10.1111/febs.14945. [Epub ahead of print]

PMID:
31152679
2.

Interferons type II and their receptors R1 and R2 in fish species: Evolution, structure, and function.

Zahradník J, Kolářová L, Pařízková H, Kolenko P, Schneider B.

Fish Shellfish Immunol. 2018 Aug;79:140-152. doi: 10.1016/j.fsi.2018.05.008. Epub 2018 May 6.

PMID:
29742458
3.

The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form.

Zahradník J, Kolenko P, Palyzová A, Černý J, Kolářová L, Kyslíková E, Marešová H, Grulich M, Nunvar J, Šulc M, Kyslík P, Schneider B.

PLoS One. 2018 Apr 9;13(4):e0195299. doi: 10.1371/journal.pone.0195299. eCollection 2018.

4.

A DNA structural alphabet provides new insight into DNA flexibility.

Schneider B, Boǽíková P, Nečasová I, Čech P, Svozil D, Černý J.

Acta Crystallogr D Struct Biol. 2018 Jan 1;74(Pt 1):52-64. doi: 10.1107/S2059798318000050. Epub 2018 Jan 1.

5.

A DNA Structural Alphabet Distinguishes Structural Features of DNA Bound to Regulatory Proteins and in the Nucleosome Core Particle.

Schneider B, Božíková P, Čech P, Svozil D, Černý J.

Genes (Basel). 2017 Oct 18;8(10). pii: E278. doi: 10.3390/genes8100278.

6.

WatAA: Atlas of Protein Hydration. Exploring synergies between data mining and ab initio calculations.

Černý J, Schneider B, Biedermannová L.

Phys Chem Chem Phys. 2017 Jul 14;19(26):17094-17102. doi: 10.1039/c7cp00187h. Epub 2017 Jun 21.

PMID:
28636001
7.

Crystal structure of human interferon-γ receptor 2 reveals the structural basis for receptor specificity.

Mikulecký P, Zahradník J, Kolenko P, Černý J, Charnavets T, Kolářová L, Nečasová I, Pham PN, Schneider B.

Acta Crystallogr D Struct Biol. 2016 Sep;72(Pt 9):1017-25. doi: 10.1107/S2059798316012237. Epub 2016 Aug 18.

8.

Hydration of proteins and nucleic acids: Advances in experiment and theory. A review.

Biedermannová L, Schneider B.

Biochim Biophys Acta. 2016 Sep;1860(9):1821-35. doi: 10.1016/j.bbagen.2016.05.036. Epub 2016 May 27. Review.

PMID:
27241846
9.

DNATCO: assignment of DNA conformers at dnatco.org.

Černý J, Božíková P, Schneider B.

Nucleic Acids Res. 2016 Jul 8;44(W1):W284-7. doi: 10.1093/nar/gkw381. Epub 2016 May 5.

10.

Structure of the ordered hydration of amino acids in proteins: analysis of crystal structures.

Biedermannová L, Schneider B.

Acta Crystallogr D Biol Crystallogr. 2015 Nov;71(Pt 11):2192-202. doi: 10.1107/S1399004715015679. Epub 2015 Oct 27.

11.

Protein flexibility in the light of structural alphabets.

Craveur P, Joseph AP, Esque J, Narwani TJ, Noël F, Shinada N, Goguet M, Leonard S, Poulain P, Bertrand O, Faure G, Rebehmed J, Ghozlane A, Swapna LS, Bhaskara RM, Barnoud J, Téletchéa S, Jallu V, Cerny J, Schneider B, Etchebest C, Srinivasan N, Gelly JC, de Brevern AG.

Front Mol Biosci. 2015 May 27;2:20. doi: 10.3389/fmolb.2015.00020. eCollection 2015. Review.

12.

Redesigning protein cavities as a strategy for increasing affinity in protein-protein interaction: interferon- γ receptor 1 as a model.

Černý J, Biedermannová L, Mikulecký P, Zahradník J, Charnavets T, Šebo P, Schneider B.

Biomed Res Int. 2015;2015:716945. doi: 10.1155/2015/716945. Epub 2015 Apr 28.

13.

Conformational diversity of single-stranded DNA from bacterial repetitive extragenic palindromes: Implications for the DNA recognition elements of transposases.

Charnavets T, Nunvar J, Nečasová I, Völker J, Breslauer KJ, Schneider B.

Biopolymers. 2015 Oct;103(10):585-96. doi: 10.1002/bip.22666.

14.

Monitoring RAYT activity by surface plasmon resonance biosensor.

Bocková M, Špringer T, Nečasová I, Nunvar J, Schneider B, Homola J.

Anal Bioanal Chem. 2015 May;407(14):3985-93. doi: 10.1007/s00216-015-8491-y. Epub 2015 Jan 31.

PMID:
25636231
15.

Local dynamics of proteins and DNA evaluated from crystallographic B factors.

Schneider B, Gelly JC, de Brevern AG, Černý J.

Acta Crystallogr D Biol Crystallogr. 2014 Sep;70(Pt 9):2413-9. doi: 10.1107/S1399004714014631. Epub 2014 Aug 29.

16.

Draft Genome Sequence of Stenotrophomonas maltophilia Strain 5BA-I-2, a Soil Isolate and a Member of a Phylogenetically Basal Lineage.

Nunvar J, Elhottova D, Chronakova A, Schneider B, Licha I.

Genome Announc. 2014 Mar 6;2(2). pii: e00134-14. doi: 10.1128/genomeA.00134-14.

17.

Human interleukin-23 receptor antagonists derived from an albumin-binding domain scaffold inhibit IL-23-dependent ex vivo expansion of IL-17-producing T-cells.

Kuchař M, Vaňková L, Petroková H, Cerný J, Osička R, Pelák O, Sípová H, Schneider B, Homola J, Sebo P, Kalina T, Malý P.

Proteins. 2014 Jun;82(6):975-89. doi: 10.1002/prot.24472. Epub 2013 Nov 23.

18.

Bioinformatic analysis of the protein/DNA interface.

Schneider B, Cerný J, Svozil D, Cech P, Gelly JC, de Brevern AG.

Nucleic Acids Res. 2014 Mar;42(5):3381-94. doi: 10.1093/nar/gkt1273. Epub 2013 Dec 11.

19.

Increasing affinity of interferon-γ receptor 1 to interferon-γ by computer-aided design.

Mikulecký P, Cerný J, Biedermannová L, Petroková H, Kuchař M, Vondrášek J, Malý P, Šebo P, Schneider B.

Biomed Res Int. 2013;2013:752514. doi: 10.1155/2013/752514. Epub 2013 Oct 2.

20.

Charge transfer through DNA/DNA duplexes and DNA/RNA hybrids: complex theoretical and experimental studies.

Kratochvílová I, Vala M, Weiter M, Špérová M, Schneider B, Páv O, Šebera J, Rosenberg I, Sychrovský V.

Biophys Chem. 2013 Oct-Nov;180-181:127-34. doi: 10.1016/j.bpc.2013.07.009. Epub 2013 Jul 31.

PMID:
23968861

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