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Items: 1 to 20 of 39

1.

Toward a Model for Activation of Orai Channel.

Dong H, Zhang Y, Song R, Xu J, Yuan Y, Liu J, Li J, Zheng S, Liu T, Lu B, Wang Y, Klein ML.

iScience. 2019 Jun 28;16:356-367. doi: 10.1016/j.isci.2019.05.041. Epub 2019 Jun 1.

2.

Conic shapes have higher sensitivity than cylindrical ones in nanopore DNA sequencing.

Tu B, Bai S, Lu B, Fang Q.

Sci Rep. 2018 Jun 14;8(1):9097. doi: 10.1038/s41598-018-27517-8.

3.

Molecular Surface Remeshing with Local Region Refinement.

Khan D, Yan DM, Gui S, Lu B, Zhang X.

Int J Mol Sci. 2018 May 6;19(5). pii: E1383. doi: 10.3390/ijms19051383.

4.

A Finite Element Solution of Lateral Periodic Poisson-Boltzmann Model for Membrane Channel Proteins.

Ji N, Liu T, Xu J, Shen LQ, Lu B.

Int J Mol Sci. 2018 Feb 28;19(3). pii: E695. doi: 10.3390/ijms19030695.

5.

Incorporating Born solvation energy into the three-dimensional Poisson-Nernst-Planck model to study ion selectivity in KcsA K^{+} channels.

Liu X, Lu B.

Phys Rev E. 2017 Dec;96(6-1):062416. doi: 10.1103/PhysRevE.96.062416. Epub 2017 Dec 26.

PMID:
29347452
6.

Quality improvement of surface triangular mesh using a modified Laplacian smoothing approach avoiding intersection.

Liu T, Chen M, Song Y, Li H, Lu B.

PLoS One. 2017 Sep 8;12(9):e0184206. doi: 10.1371/journal.pone.0184206. eCollection 2017.

7.

An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data.

Lu J, Xu G, Zhang S, Lu B.

Algorithms Mol Biol. 2016 Jun 21;11:18. doi: 10.1186/s13015-016-0079-3. eCollection 2016.

8.

Charged Substrate and Product Together Contribute Like a Nonreactive Species to the Overall Electrostatic Steering in Diffusion-Reaction Processes.

Xu J, Xie Y, Lu B, Zhang L.

J Phys Chem B. 2016 Aug 25;120(33):8147-53. doi: 10.1021/acs.jpcb.6b01393. Epub 2016 Apr 12.

PMID:
27070411
9.

Parameterization for molecular Gaussian surface and a comparison study of surface mesh generation.

Liu T, Chen M, Lu B.

J Mol Model. 2015 May;21(5):113. doi: 10.1007/s00894-015-2654-9. Epub 2015 Apr 12.

PMID:
25862632
10.
11.
12.

VCMM: a visual tool for continuum molecular modeling.

Bai S, Lu B.

J Mol Graph Model. 2014 May;50:44-9. doi: 10.1016/j.jmgm.2014.03.006. Epub 2014 Mar 28.

PMID:
24727264
13.

A parallel finite element simulator for ion transport through three-dimensional ion channel systems.

Tu B, Chen M, Xie Y, Zhang L, Eisenberg B, Lu B.

J Comput Chem. 2013 Sep 15;34(24):2065-78. doi: 10.1002/jcc.23329. Epub 2013 Jun 5.

PMID:
23740647
14.

Triangulated manifold meshing method preserving molecular surface topology.

Chen M, Tu B, Lu B.

J Mol Graph Model. 2012 Sep;38:411-8. doi: 10.1016/j.jmgm.2012.09.006. Epub 2012 Oct 10.

PMID:
23117290
15.
17.

Continuum electromechanical modeling of protein-membrane interactions.

Zhou YC, Lu B, Gorfe AA.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Oct;82(4 Pt 1):041923. Epub 2010 Oct 28.

PMID:
21230329
18.

TMSmesh: A Robust Method for Molecular Surface Mesh Generation Using a Trace Technique.

Chen M, Lu B.

J Chem Theory Comput. 2011 Jan 11;7(1):203-12. doi: 10.1021/ct100376g. Epub 2010 Nov 30.

PMID:
26606233
19.

AFMPB: An Adaptive Fast Multipole Poisson-Boltzmann Solver for Calculating Electrostatics in Biomolecular Systems.

Lu B, Cheng X, Huang J, McCammon JA.

Comput Phys Commun. 2010 Jun 1;181(6):1150-1160.

20.

Solutions to a reduced Poisson-Nernst-Planck system and determination of reaction rates.

Li B, Lu B, Wang Z, McCammon JA.

Physica A. 2010 Apr 1;389(7):1329-1345.

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