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Items: 1 to 20 of 87

1.

SICOR: Subgraph Isomorphism Comparison of RNA Secondary Structures.

Schmidt M, Hamacher K, Reinhardt F, Lotz T, Groher F, Suess B, Jager S.

IEEE/ACM Trans Comput Biol Bioinform. 2019 Jul 10. doi: 10.1109/TCBB.2019.2926711. [Epub ahead of print]

PMID:
31295116
2.

Dynamic nuclear polarization on a hybridized hammerhead ribozyme: An explorative study of RNA folding and direct DNP with a paramagnetic metal ion cofactor.

Daube D, Vogel M, Suess B, Corzilius B.

Solid State Nucl Magn Reson. 2019 Sep;101:21-30. doi: 10.1016/j.ssnmr.2019.04.005. Epub 2019 Apr 22.

PMID:
31078101
3.

Binding of tetracycline to its aptamer determined by 2D-correlated Mn2+ hyperfine spectroscopy.

Hetzke T, Bowen AM, Vogel M, Gauger M, Suess B, Prisner TF.

J Magn Reson. 2019 Jun;303:105-114. doi: 10.1016/j.jmr.2019.04.011. Epub 2019 Apr 28.

PMID:
31039520
4.

Next-level riboswitch development-implementation of Capture-SELEX facilitates identification of a new synthetic riboswitch.

Boussebayle A, Torka D, Ollivaud S, Braun J, Bofill-Bosch C, Dombrowski M, Groher F, Hamacher K, Suess B.

Nucleic Acids Res. 2019 May 21;47(9):4883-4895. doi: 10.1093/nar/gkz216.

5.

RNA-based Capture-SELEX for the selection of small molecule-binding aptamers.

Boussebayle A, Groher F, Suess B.

Methods. 2019 May 15;161:10-15. doi: 10.1016/j.ymeth.2019.04.004. Epub 2019 Apr 4.

PMID:
30953759
6.

miR-574-5p as RNA decoy for CUGBP1 stimulates human lung tumor growth by mPGES-1 induction.

Saul MJ, Baumann I, Bruno A, Emmerich AC, Wellstein J, Ottinger SM, Contursi A, Dovizio M, Donnini S, Tacconelli S, Raouf J, Idborg H, Stein S, Korotkova M, Savai R, Terzuoli E, Sala G, Seeger W, Jakobsson PJ, Patrignani P, Suess B, Steinhilber D.

FASEB J. 2019 Jun;33(6):6933-6947. doi: 10.1096/fj.201802547R. Epub 2019 Mar 28.

PMID:
30922080
7.

Promoter RNA sequencing (PRSeq) for the massive and quantitative promoter analysis in vitro.

Ohuchi S, Mascher T, Suess B.

Sci Rep. 2019 Feb 28;9(1):3118. doi: 10.1038/s41598-019-39892-x.

8.

Complex Formation of the Tetracycline-Binding Aptamer Investigated by Specific Cross-Relaxation under DNP.

Aladin V, Vogel M, Binder R, Burghardt I, Suess B, Corzilius B.

Angew Chem Int Ed Engl. 2019 Apr 1;58(15):4863-4868. doi: 10.1002/anie.201811941. Epub 2019 Mar 8.

PMID:
30768874
9.

Characterization and Inkjet Printing of an RNA Aptamer for Paper-Based Biosensing of Ciprofloxacin.

Jaeger J, Groher F, Stamm J, Spiehl D, Braun J, Dörsam E, Suess B.

Biosensors (Basel). 2019 Jan 2;9(1). pii: E7. doi: 10.3390/bios9010007.

10.

A light-responsive RNA aptamer for an azobenzene derivative.

Lotz TS, Halbritter T, Kaiser C, Rudolph MM, Kraus L, Groher F, Steinwand S, Wachtveitl J, Heckel A, Suess B.

Nucleic Acids Res. 2019 Feb 28;47(4):2029-2040. doi: 10.1093/nar/gky1225.

11.

Tuning the Performance of Synthetic Riboswitches using Machine Learning.

Groher AC, Jager S, Schneider C, Groher F, Hamacher K, Suess B.

ACS Synth Biol. 2019 Jan 18;8(1):34-44. doi: 10.1021/acssynbio.8b00207. Epub 2019 Jan 8.

PMID:
30513199
12.

Influence of Mg2+ on the conformational flexibility of a tetracycline aptamer.

Hetzke T, Vogel M, Gophane DB, Weigand JE, Suess B, Sigurdsson ST, Prisner TF.

RNA. 2019 Jan;25(1):158-167. doi: 10.1261/rna.068684.118. Epub 2018 Oct 18.

PMID:
30337459
13.

Small-Molecule-Binding Riboswitches.

Lotz TS, Suess B.

Microbiol Spectr. 2018 Aug;6(4). doi: 10.1128/microbiolspec.RWR-0025-2018. Review.

PMID:
30084346
14.

A small, portable RNA device for the control of exon skipping in mammalian cells.

Vogel M, Weigand JE, Kluge B, Grez M, Suess B.

Nucleic Acids Res. 2018 May 4;46(8):e48. doi: 10.1093/nar/gky062.

15.

Riboswitching with ciprofloxacin-development and characterization of a novel RNA regulator.

Groher F, Bofill-Bosch C, Schneider C, Braun J, Jager S, Geißler K, Hamacher K, Suess B.

Nucleic Acids Res. 2018 Feb 28;46(4):2121-2132. doi: 10.1093/nar/gkx1319.

16.

Altered stoichiometry of an evolved RNA aptamer.

Ohuchi S, Suess B.

RNA. 2018 Apr;24(4):480-485. doi: 10.1261/rna.063610.117. Epub 2017 Dec 28.

17.

Design and implementation of a synthetic pre-miR switch for controlling miRNA biogenesis in mammals.

Atanasov J, Groher F, Weigand JE, Suess B.

Nucleic Acids Res. 2017 Dec 15;45(22):e181. doi: 10.1093/nar/gkx858.

18.

TGFβ/SMAD signalling modulates MLL and MLL-AF4 mediated 5-lipoxygenase promoter activation.

Saul MJ, Groher F, Hegewald AB, Müller-McNicoll M, Marschalek R, Suess B, Steinhilber D.

Prostaglandins Other Lipid Mediat. 2017 Nov;133:60-67. doi: 10.1016/j.prostaglandins.2017.07.006. Epub 2017 Aug 11.

PMID:
28803964
19.

ROC'n'Ribo: Characterizing a Riboswitching Expression System by Modeling Single-Cell Data.

Schneider C, Bronstein L, Diemer J, Koeppl H, Suess B.

ACS Synth Biol. 2017 Jul 21;6(7):1211-1224. doi: 10.1021/acssynbio.6b00322. Epub 2017 Jun 30.

PMID:
28591515
20.

Pausing guides RNA folding to populate transiently stable RNA structures for riboswitch-based transcription regulation.

Steinert H, Sochor F, Wacker A, Buck J, Helmling C, Hiller F, Keyhani S, Noeske J, Grimm S, Rudolph MM, Keller H, Mooney RA, Landick R, Suess B, Fürtig B, Wöhnert J, Schwalbe H.

Elife. 2017 May 25;6. pii: e21297. doi: 10.7554/eLife.21297.

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