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Items: 1 to 20 of 29


sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression.

Aparicio-Puerta E, Lebrón R, Rueda A, Gómez-Martín C, Giannoukakos S, Jaspez D, Medina JM, Zubkovic A, Jurak I, Fromm B, Marchal JA, Oliver J, Hackenberg M.

Nucleic Acids Res. 2019 Jul 2;47(W1):W530-W535. doi: 10.1093/nar/gkz415.


Integrative genomic analysis of peritoneal malignant mesothelioma: understanding a case with extraordinary chemotherapy response.

Lund-Andersen C, Nakken S, Nygård S, Fromm B, Aasheim LB, Davidson B, Julsrud L, Abrahamsen TW, Kristensen AT, Dybdahl B, Larsen SG, Hovig E, Flatmark K.

Cold Spring Harb Mol Case Stud. 2019 Apr 1;5(2). pii: a003566. doi: 10.1101/mcs.a003566. Print 2019 Apr.


Exploration of extracellular vesicles from Ascaris suum provides evidence of parasite-host cross talk.

Hansen EP, Fromm B, Andersen SD, Marcilla A, Andersen KL, Borup A, Williams AR, Jex AR, Gasser RB, Young ND, Hall RS, Stensballe A, Ovchinnikov V, Yan Y, Fredholm M, Thamsborg SM, Nejsum P.

J Extracell Vesicles. 2019 Feb 14;8(1):1578116. doi: 10.1080/20013078.2019.1578116. eCollection 2019.


Evolutionary Implications of the microRNA- and piRNA Complement of Lepidodermella squamata (Gastrotricha).

Fromm B, Tosar JP, Aguilera F, Friedländer MR, Bachmann L, Hejnol A.

Noncoding RNA. 2019 Feb 22;5(1). pii: E19. doi: 10.3390/ncrna5010019.


miRTrace reveals the organismal origins of microRNA sequencing data.

Kang W, Eldfjell Y, Fromm B, Estivill X, Biryukova I, Friedländer MR.

Genome Biol. 2018 Dec 4;19(1):213. doi: 10.1186/s13059-018-1588-9.


Unicellular Origin of the Animal MicroRNA Machinery.

Bråte J, Neumann RS, Fromm B, Haraldsen AAB, Tarver JE, Suga H, Donoghue PCJ, Peterson KJ, Ruiz-Trillo I, Grini PE, Shalchian-Tabrizi K.

Curr Biol. 2018 Oct 22;28(20):3288-3295.e5. doi: 10.1016/j.cub.2018.08.018. Epub 2018 Oct 11.


Plant microRNAs in human sera are likely contaminants.

Fromm B, Kang W, Rovira C, Cayota A, Witwer K, Friedländer MR, Tosar JP.

J Nutr Biochem. 2019 Mar;65:139-140. doi: 10.1016/j.jnutbio.2018.07.019. Epub 2018 Sep 5. No abstract available.


Large scale changes in the transcriptome of Eisenia fetida during regeneration.

Bhambri A, Dhaunta N, Patel SS, Hardikar M, Bhatt A, Srikakulam N, Shridhar S, Vellarikkal S, Pandey R, Jayarajan R, Verma A, Kumar V, Gautam P, Khanna Y, Khan JA, Fromm B, Peterson KJ, Scaria V, Sivasubbu S, Pillai B.

PLoS One. 2018 Sep 27;13(9):e0204234. doi: 10.1371/journal.pone.0204234. eCollection 2018.


Human and Cow Have Identical miR-21-5p and miR-30a-5p Sequences, Which Are Likely Unsuited to Study Dietary Uptake from Cow Milk.

Fromm B, Tosar JP, Lu Y, Halushka MK, Witwer KW.

J Nutr. 2018 Sep 1;148(9):1506-1507. doi: 10.1093/jn/nxy144. No abstract available.


Well-Annotated microRNAomes Do Not Evidence Pervasive miRNA Loss.

Tarver JE, Taylor RS, Puttick MN, Lloyd GT, Pett W, Fromm B, Schirrmeister BE, Pisani D, Peterson KJ, Donoghue PCJ.

Genome Biol Evol. 2018 Jun 1;10(6):1457-1470. doi: 10.1093/gbe/evy096.


Big Strides in Cellular MicroRNA Expression.

Halushka MK, Fromm B, Peterson KJ, McCall MN.

Trends Genet. 2018 Mar;34(3):165-167. doi: 10.1016/j.tig.2017.12.015. Epub 2018 Jan 18. Review.


A comprehensive profile of circulating RNAs in human serum.

Umu SU, Langseth H, Bucher-Johannessen C, Fromm B, Keller A, Meese E, Lauritzen M, Leithaug M, Lyle R, Rounge TB.

RNA Biol. 2018 Feb 1;15(2):242-250. doi: 10.1080/15476286.2017.1403003. Epub 2017 Dec 8.


Identification of non-invasive miRNAs biomarkers for prostate cancer by deep sequencing analysis of urinary exosomes.

Rodríguez M, Bajo-Santos C, Hessvik NP, Lorenz S, Fromm B, Berge V, Sandvig K, Linē A, Llorente A.

Mol Cancer. 2017 Oct 5;16(1):156. doi: 10.1186/s12943-017-0726-4.


Extreme conservation of miRNA complements in opisthorchiids.

Ovchinnikov VY, Mordvinov VA, Fromm B.

Parasitol Int. 2017 Dec;66(6):773-776. doi: 10.1016/j.parint.2017.09.006. Epub 2017 Sep 12.


Atp8 is in the ground pattern of flatworm mitochondrial genomes.

Egger B, Bachmann L, Fromm B.

BMC Genomics. 2017 May 26;18(1):414. doi: 10.1186/s12864-017-3807-2.


GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome.

Simovski B, Vodák D, Gundersen S, Domanska D, Azab A, Holden L, Holden M, Grytten I, Rand K, Drabløs F, Johansen M, Mora A, Lund-Andersen C, Fromm B, Eskeland R, Gabrielsen OS, Ferkingstad E, Nakken S, Bengtsen M, Nederbragt AJ, Thorarensen HS, Akse JA, Glad I, Hovig E, Sandve GK.

Gigascience. 2017 Jul 1;6(7):1-12. doi: 10.1093/gigascience/gix032.


Pathway-based classification of breast cancer subtypes.

Graudenzi A, Cava C, Bertoli G, Fromm B, Flatmark K, Mauri G, Castiglioni I.

Front Biosci (Landmark Ed). 2017 Jun 1;22:1697-1712.


The microRNA toolkit of insects.

Ylla G, Fromm B, Piulachs MD, Belles X.

Sci Rep. 2016 Nov 24;6:37736. doi: 10.1038/srep37736.


microRNAs as cancer biomarkers.

Flatmark K, Høye E, Fromm B.

Scand J Clin Lab Invest Suppl. 2016;245:S80-3. doi: 10.1080/00365513.2016.1210330. Epub 2016 Aug 9.


Deciphering the function of non-coding RNAs in prostate cancer.

Ramalho-Carvalho J, Fromm B, Henrique R, Jerónimo C.

Cancer Metastasis Rev. 2016 Jun;35(2):235-62. doi: 10.1007/s10555-016-9628-y. Review.


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